Zinc in PDB 8xbs: C. Elegans Apo-SID1 Structure

The binding sites of Zinc atom in the C. Elegans Apo-SID1 Structure (pdb code 8xbs). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the C. Elegans Apo-SID1 Structure, PDB code: 8xbs:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the C. Elegans Apo-SID1 Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of C. Elegans Apo-SID1 Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn801 b:68.4 occ:1.00 NE2 A:HIS740 2.3 31.6 1.0 NE2 A:HIS744 2.3 15.6 1.0 NE2 A:HIS540 2.3 28.0 1.0 OD2 A:ASP551 2.5 50.1 1.0 CD2 A:HIS740 2.9 20.6 1.0 OD1 A:ASP551 3.0 45.0 1.0 CG A:ASP551 3.1 41.1 1.0 CE1 A:HIS744 3.2 22.1 1.0 CE1 A:HIS540 3.2 7.6 1.0 CD2 A:HIS540 3.3 22.6 1.0 CD2 A:HIS744 3.4 25.4 1.0 CE1 A:HIS740 3.5 35.2 1.0 OG A:SER536 3.6 35.4 1.0 CG A:HIS740 4.2 30.4 1.0 ND1 A:HIS744 4.3 21.4 1.0 ND1 A:HIS540 4.3 20.1 1.0 CG A:HIS540 4.4 21.0 1.0 ND1 A:HIS740 4.4 38.2 1.0 CG A:HIS744 4.5 25.6 1.0 CB A:SER536 4.5 21.4 1.0 CB A:ASP551 4.6 33.5 1.0 NE1 A:TRP743 4.6 18.3 1.0 CD1 A:TRP743 4.6 19.9 1.0 CD2 A:TYR539 4.7 20.6 1.0

Zinc binding site 2 out of 2 in the C. Elegans Apo-SID1 Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of C. Elegans Apo-SID1 Structure within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn801 b:68.4 occ:1.00 NE2 B:HIS740 2.3 31.6 1.0 NE2 B:HIS744 2.3 15.6 1.0 NE2 B:HIS540 2.3 28.0 1.0 OD2 B:ASP551 2.5 50.1 1.0 CD2 B:HIS740 2.9 20.6 1.0 OD1 B:ASP551 3.0 45.0 1.0 CG B:ASP551 3.1 41.1 1.0 CE1 B:HIS744 3.2 22.1 1.0 CE1 B:HIS540 3.2 7.6 1.0 CD2 B:HIS540 3.3 22.6 1.0 CD2 B:HIS744 3.4 25.4 1.0 CE1 B:HIS740 3.5 35.2 1.0 OG B:SER536 3.6 35.4 1.0 CG B:HIS740 4.2 30.4 1.0 ND1 B:HIS744 4.3 21.4 1.0 ND1 B:HIS540 4.3 20.1 1.0 CG B:HIS540 4.4 21.0 1.0 ND1 B:HIS740 4.4 38.2 1.0 CG B:HIS744 4.5 25.6 1.0 CB B:SER536 4.5 21.4 1.0 CB B:ASP551 4.6 33.5 1.0 NE1 B:TRP743 4.6 18.3 1.0 CD1 B:TRP743 4.6 19.9 1.0 CD2 B:TYR539 4.7 20.6 1.0

R.Wang, Y.Cong, D.Qian, C.Yan, D.Gong. Structural Basis For Double-Stranded Rna Recognition By SID1. Nucleic Acids Res. 2024.
ISSN: ESSN 1362-4962
PubMed: 38742627
DOI: 10.1093/NAR/GKAE395