Zinc in PDB 8x6w: Crystal Structure of Efcda

The structure of Crystal Structure of Efcda, PDB code: 8x6w was solved by L.Jiang, Y.Huang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.17 / 1.75
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	83.331, 83.331, 81.702, 90, 90, 120
R / Rfree (%)	18.3 / 20.9

The binding sites of Zinc atom in the Crystal Structure of Efcda (pdb code 8x6w). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Efcda, PDB code: 8x6w:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Efcda


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Efcda within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:11.7 occ:1.00 SG A:CYS91 2.3 10.9 1.0 SG A:CYS55 2.3 10.6 1.0 O A:HOH318 2.3 12.9 1.0 SG A:CYS88 2.3 10.7 1.0 CB A:CYS55 3.0 8.8 1.0 CB A:CYS91 3.3 10.5 1.0 CB A:CYS88 3.4 8.4 1.0 N A:CYS88 3.8 10.5 1.0 N A:CYS91 3.9 8.7 1.0 OE2 A:GLU57 3.9 10.5 1.0 CA A:CYS88 4.1 9.3 1.0 CA A:CYS91 4.2 9.3 1.0 NH2 A:ARG58 4.2 12.1 1.0 OE1 A:GLU57 4.2 11.6 1.0 O A:HOH462 4.3 27.5 1.0 CD A:GLU57 4.3 11.4 1.0 O A:CYS88 4.4 10.5 1.0 NE A:ARG58 4.4 12.3 1.0 C A:CYS88 4.5 11.8 1.0 CA A:CYS55 4.5 7.6 1.0 O A:HOH361 4.5 10.8 1.0 O A:HOH372 4.6 20.0 1.0 CZ A:ARG58 4.8 15.9 1.0 C A:PRO87 4.9 11.1 1.0 CB A:ALA90 5.0 9.6 1.0 C A:ALA90 5.0 9.2 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Efcda


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Efcda within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:13.1 occ:1.00 SG B:CYS55 2.3 11.7 1.0 O B:HOH318 2.3 11.8 1.0 SG B:CYS91 2.3 12.3 1.0 SG B:CYS88 2.3 11.4 1.0 CB B:CYS55 3.0 10.7 1.0 CB B:CYS91 3.3 11.6 1.0 CB B:CYS88 3.4 11.3 1.0 N B:CYS88 3.8 13.5 1.0 N B:CYS91 3.9 9.5 1.0 OE2 B:GLU57 4.0 12.8 1.0 CA B:CYS88 4.0 13.4 1.0 NH2 B:ARG58 4.1 12.2 1.0 CA B:CYS91 4.2 11.7 1.0 OE1 B:GLU57 4.2 12.4 1.0 CD B:GLU57 4.4 14.2 1.0 O B:HOH379 4.4 21.3 1.0 O B:CYS88 4.4 9.8 1.0 NE B:ARG58 4.4 13.7 1.0 CA B:CYS55 4.5 12.1 1.0 C B:CYS88 4.5 11.0 1.0 O B:HOH369 4.6 12.6 1.0 CZ B:ARG58 4.7 12.2 1.0 C B:PRO87 4.9 13.7 1.0

L.Jiang, Y.Huang. Crystal Structure of Efcda To Be Published.