Zinc in PDB 8x6u: Crystal Structure of Efcda in Complex with Dfdu

The structure of Crystal Structure of Efcda in Complex with Dfdu, PDB code: 8x6u was solved by L.Jiang, Y.Huang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.09 / 1.75
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	82.914, 82.914, 81.646, 90, 90, 120
R / Rfree (%)	16.1 / 18.6

The structure of Crystal Structure of Efcda in Complex with Dfdu also contains other interesting chemical elements:

Fluorine

(F)

4 atoms

The binding sites of Zinc atom in the Crystal Structure of Efcda in Complex with Dfdu (pdb code 8x6u). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Efcda in Complex with Dfdu, PDB code: 8x6u:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Efcda in Complex with Dfdu


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Efcda in Complex with Dfdu within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:16.9 occ:1.00 SG A:CYS91 2.3 14.6 1.0 SG A:CYS88 2.3 16.3 1.0 SG A:CYS55 2.3 15.8 1.0 O5 A:Y7U202 2.4 19.8 0.9 C4 A:Y7U202 2.7 24.7 0.7 CB A:CYS55 3.1 17.7 1.0 N2 A:Y7U202 3.2 25.7 0.8 CB A:CYS91 3.3 15.1 1.0 CB A:CYS88 3.3 12.7 1.0 C1 A:Y7U202 3.4 31.6 0.9 N A:CYS88 3.8 15.0 1.0 N A:CYS91 3.9 13.9 1.0 CA A:CYS88 4.0 13.7 1.0 C3 A:Y7U202 4.2 28.1 0.6 CA A:CYS91 4.2 14.2 1.0 OE1 A:GLU57 4.2 17.3 1.0 OE2 A:GLU57 4.3 19.9 1.0 NH2 A:ARG58 4.3 19.9 1.0 C2 A:Y7U202 4.3 21.4 1.0 O A:CYS88 4.3 17.3 1.0 NE A:ARG58 4.3 17.1 1.0 C A:CYS88 4.4 15.7 1.0 CD A:GLU57 4.4 18.3 1.0 CA A:CYS55 4.5 13.2 1.0 N1 A:Y7U202 4.6 18.5 1.0 CZ A:ARG58 4.8 20.5 1.0 C A:PRO87 4.9 15.8 1.0 O1 A:Y7U202 4.9 32.1 1.0 CB A:ALA90 5.0 15.5 1.0 C A:ALA90 5.0 15.2 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Efcda in Complex with Dfdu


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Efcda in Complex with Dfdu within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:19.0 occ:1.00 SG B:CYS91 2.3 17.0 1.0 SG B:CYS55 2.3 17.5 1.0 SG B:CYS88 2.3 16.6 1.0 O5 B:Y7U202 2.4 20.4 0.9 C4 B:Y7U202 2.8 21.9 0.8 CB B:CYS55 3.1 17.1 1.0 CB B:CYS91 3.3 17.5 1.0 N2 B:Y7U202 3.3 21.9 0.9 CB B:CYS88 3.3 15.3 1.0 C1 B:Y7U202 3.6 21.7 1.0 N B:CYS88 3.7 17.0 1.0 N B:CYS91 3.9 14.6 1.0 CA B:CYS88 4.0 16.0 1.0 NH2 B:ARG58 4.1 17.9 1.0 CA B:CYS91 4.2 16.9 1.0 OE1 B:GLU57 4.2 17.2 1.0 NE B:ARG58 4.3 17.4 1.0 C3 B:Y7U202 4.3 21.5 0.8 O B:CYS88 4.3 15.6 1.0 OE2 B:GLU57 4.4 21.1 1.0 C B:CYS88 4.4 18.1 1.0 CD B:GLU57 4.5 20.6 1.0 C2 B:Y7U202 4.5 20.2 1.0 CA B:CYS55 4.5 15.2 1.0 CZ B:ARG58 4.7 19.6 1.0 N1 B:Y7U202 4.8 18.7 0.9 C B:PRO87 4.9 21.5 1.0 C B:ALA90 5.0 13.7 1.0 CB B:ALA90 5.0 15.5 1.0

L.Jiang, Y.Huang. Crystal Structure of Efcda in Complex with Dfdu To Be Published.