Zinc in PDB 8wlx: Crystal Structure of P123A_MSD

The structure of Crystal Structure of P123A_MSD, PDB code: 8wlx was solved by S.Porathoor, R.Anand, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.76 / 1.56
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	63.66, 108.56, 53.19, 90, 90, 90
R / Rfree (%)	17 / 19.3

The binding sites of Zinc atom in the Crystal Structure of P123A_MSD (pdb code 8wlx). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of P123A_MSD, PDB code: 8wlx:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of P123A_MSD


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of P123A_MSD within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn204 b:14.3 occ:1.00 O A:HOH311 1.9 15.8 1.0 ND1 A:HIS56 2.0 13.4 1.0 SG A:CYS89 2.3 15.2 1.0 SG A:CYS86 2.3 13.1 1.0 CE1 A:HIS56 2.9 14.4 1.0 CG A:HIS56 3.1 15.3 1.0 CB A:CYS89 3.2 13.8 1.0 CB A:CYS86 3.4 13.9 1.0 CB A:HIS56 3.5 14.4 1.0 N A:CYS86 3.8 12.9 1.0 N A:CYS89 4.0 11.9 1.0 OE2 A:GLU58 4.0 27.7 1.0 CE A:MET88 4.1 17.9 1.0 CA A:CYS86 4.1 12.7 1.0 NE2 A:HIS56 4.1 14.6 1.0 CA A:CYS89 4.2 12.4 1.0 CD2 A:HIS56 4.2 15.3 1.0 OE1 A:GLU58 4.3 15.1 1.0 CD A:GLU58 4.4 19.2 1.0 O A:CYS86 4.4 12.4 1.0 C A:CYS86 4.5 13.2 1.0 CB A:MET88 4.5 12.4 1.0 NE1 B:TRP95 4.9 14.3 1.0 C A:HIS85 4.9 12.6 1.0 C A:MET88 5.0 11.0 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of P123A_MSD


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of P123A_MSD within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn208 b:12.9 occ:1.00 O B:HOH321 2.0 14.7 1.0 ND1 B:HIS56 2.0 13.2 1.0 SG B:CYS89 2.3 13.7 1.0 SG B:CYS86 2.3 12.1 1.0 CE1 B:HIS56 2.9 13.9 1.0 CG B:HIS56 3.1 13.7 1.0 CB B:CYS89 3.2 11.8 1.0 CB B:CYS86 3.4 11.9 1.0 CB B:HIS56 3.5 12.9 1.0 N B:CYS86 3.8 11.3 1.0 N B:CYS89 4.0 11.0 1.0 CE B:MET88 4.0 15.4 1.0 CA B:CYS86 4.1 11.7 1.0 OE2 B:GLU58 4.1 29.0 1.0 NE2 B:HIS56 4.1 15.4 1.0 O B:HOH419 4.1 25.4 1.0 CD2 B:HIS56 4.2 14.8 1.0 CA B:CYS89 4.2 11.2 1.0 OE1 B:GLU58 4.2 15.1 1.0 CD B:GLU58 4.5 20.9 1.0 O B:CYS86 4.5 10.6 1.0 C B:CYS86 4.5 12.6 1.0 CB B:MET88 4.7 12.2 1.0 NE1 A:TRP95 4.9 13.5 1.0 C B:HIS85 4.9 11.6 1.0 C B:MET88 5.0 11.6 1.0

S.Porathoor, R.Anand. Crystal Structure of P123A_MSD To Be Published.