Zinc in PDB 8wd8: Cryo-Em Structure of Ttdago-Guide Dna-Target Dna Complex

The structure of Cryo-Em Structure of Ttdago-Guide Dna-Target Dna Complex also contains other interesting chemical elements:

Magnesium

(Mg)

6 atoms

The binding sites of Zinc atom in the Cryo-Em Structure of Ttdago-Guide Dna-Target Dna Complex (pdb code 8wd8). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Ttdago-Guide Dna-Target Dna Complex, PDB code: 8wd8:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of Ttdago-Guide Dna-Target Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Ttdago-Guide Dna-Target Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn801 b:106.0 occ:1.00 ND1 A:HIS546 1.9 16.0 1.0 ND1 B:HIS546 1.9 16.0 1.0 CE1 A:HIS249 2.3 45.2 1.0 CE1 B:HIS249 2.3 45.2 1.0 NE2 B:HIS249 2.7 50.9 1.0 NE2 A:HIS249 2.7 50.9 1.0 CE1 A:HIS546 2.8 18.6 1.0 CE1 B:HIS546 2.8 18.6 1.0 CG A:HIS546 2.9 16.4 1.0 CG B:HIS546 2.9 16.4 1.0 CB A:HIS546 3.3 8.2 1.0 CB B:HIS546 3.3 8.2 1.0 ND1 A:HIS249 3.6 50.0 1.0 ND1 B:HIS249 3.6 50.0 1.0 NE2 A:HIS546 3.9 23.3 1.0 NE2 B:HIS546 4.0 23.3 1.0 CD2 A:HIS546 4.0 19.4 1.0 CD2 B:HIS546 4.0 19.4 1.0 CD2 B:HIS249 4.1 51.2 1.0 CD2 A:HIS249 4.1 51.2 1.0 CG B:HIS249 4.5 46.9 1.0 CG A:HIS249 4.5 46.9 1.0 O A:HIS546 4.5 28.1 1.0 O B:HIS546 4.5 28.1 1.0 CA A:HIS546 4.7 6.9 1.0 CA B:HIS546 4.7 6.9 1.0

L.Zhuang, L.Zhuang. N/A N/A.
ISSN: ISSN 1097-2765
DOI: 10.1016/J.MOLCEL.2024.01.004