Zinc in PDB 8w51: Structure of Ychf(H114A) on E.Coli 50S Ribosomal Subunit

The structure of Structure of Ychf(H114A) on E.Coli 50S Ribosomal Subunit also contains other interesting chemical elements:

Magnesium

(Mg)

104 atoms

The binding sites of Zinc atom in the Structure of Ychf(H114A) on E.Coli 50S Ribosomal Subunit (pdb code 8w51). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Ychf(H114A) on E.Coli 50S Ribosomal Subunit, PDB code: 8w51:

Zinc binding site 1 out of 1 in the Structure of Ychf(H114A) on E.Coli 50S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Ychf(H114A) on E.Coli 50S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ 5:Zn101 b:43.7 occ:1.00 ND1 5:HIS33 2.0 17.1 1.0 SG 5:CYS11 2.3 24.9 1.0 SG 5:CYS27 2.3 23.7 1.0 SG 5:CYS14 2.3 23.1 1.0 CG 5:HIS33 2.9 17.1 1.0 CE1 5:HIS33 3.0 17.1 1.0 CB 5:CYS27 3.1 23.7 1.0 CB 5:HIS33 3.2 17.1 1.0 N 5:CYS14 3.6 23.1 1.0 CB 5:CYS14 3.6 23.1 1.0 CB 5:CYS11 3.7 24.9 1.0 CA 5:CYS14 3.8 23.1 1.0 N 5:CYS11 4.0 24.9 1.0 CD2 5:HIS33 4.0 17.1 1.0 NE2 5:HIS33 4.1 17.1 1.0 C 5:ASN13 4.3 26.1 1.0 CA 5:CYS11 4.3 24.9 1.0 CA 5:CYS27 4.4 23.7 1.0 C 5:LEU10 4.5 18.9 1.0 O 5:CYS11 4.6 24.9 1.0 C 5:CYS11 4.6 24.9 1.0 CB 5:GLU30 4.6 22.2 1.0 O 5:GLU30 4.7 22.2 1.0 CA 5:HIS33 4.7 17.1 1.0 CB 5:LEU10 4.7 18.9 1.0 CB 5:ASN13 4.7 26.1 1.0 N 5:ASN13 4.7 26.1 1.0 N 5:GLU30 4.8 22.2 1.0 CA 5:ASN13 4.8 26.1 1.0 N 5:LEU10 4.9 18.9 1.0 CA 5:LEU10 4.9 18.9 1.0 O 5:ASN13 4.9 26.1 1.0

X.Li, T.Yu, Q.Li, F.Zeng. Structure Basis of Translation Regulation By Ychf Bound to Ribosome To Be Published.