Zinc in PDB 8vct: Cyoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 6:2:1 Stoichiometry From E. Coli TN7 Bound to Atpgs and Adp

The structure of Cyoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 6:2:1 Stoichiometry From E. Coli TN7 Bound to Atpgs and Adp also contains other interesting chemical elements:

Magnesium

(Mg)

6 atoms

The binding sites of Zinc atom in the Cyoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 6:2:1 Stoichiometry From E. Coli TN7 Bound to Atpgs and Adp (pdb code 8vct). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cyoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 6:2:1 Stoichiometry From E. Coli TN7 Bound to Atpgs and Adp, PDB code: 8vct:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cyoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 6:2:1 Stoichiometry From E. Coli TN7 Bound to Atpgs and Adp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cyoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 6:2:1 Stoichiometry From E. Coli TN7 Bound to Atpgs and Adp within 5.0Å range: probe atom residue distance (Å) B Occ X:Zn601 b:86.3 occ:1.00 NE2 X:HIS155 2.1 54.6 1.0 SG X:CYS124 2.3 38.8 1.0 SG X:CYS127 2.3 39.8 1.0 SG X:CYS152 2.3 56.5 1.0 CE1 X:HIS155 2.7 54.6 1.0 CD2 X:HIS155 3.0 54.6 1.0 CB X:CYS152 3.3 56.5 1.0 CB X:CYS124 3.4 38.8 1.0 ND1 X:HIS155 3.6 54.6 1.0 CB X:CYS127 3.8 39.8 1.0 CG X:HIS155 3.8 54.6 1.0 N X:CYS127 4.3 39.8 1.0 NE1 X:TRP144 4.4 25.9 1.0 O X:HIS155 4.5 54.6 1.0 CA X:CYS127 4.6 39.8 1.0 CA X:CYS152 4.8 56.5 1.0 CA X:CYS124 4.8 38.8 1.0 CD1 X:TRP144 4.8 25.9 1.0

Zinc binding site 2 out of 2 in the Cyoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 6:2:1 Stoichiometry From E. Coli TN7 Bound to Atpgs and Adp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cyoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 6:2:1 Stoichiometry From E. Coli TN7 Bound to Atpgs and Adp within 5.0Å range: probe atom residue distance (Å) B Occ Y:Zn601 b:104.6 occ:1.00 ND1 Y:HIS155 2.1 63.0 1.0 SG Y:CYS124 2.3 59.3 1.0 SG Y:CYS127 2.3 52.6 1.0 SG Y:CYS152 2.3 64.3 1.0 CE1 Y:HIS155 3.0 63.0 1.0 CG Y:HIS155 3.1 63.0 1.0 CB Y:CYS124 3.4 59.3 1.0 CB Y:HIS155 3.4 63.0 1.0 CB Y:CYS152 3.5 64.3 1.0 OD1 Y:ASP126 3.5 61.0 1.0 CB Y:CYS127 3.7 52.6 1.0 NE1 Y:TRP144 4.0 29.6 1.0 NE2 Y:HIS155 4.1 63.0 1.0 CD2 Y:HIS155 4.2 63.0 1.0 N Y:CYS127 4.3 52.6 1.0 CD1 Y:TRP144 4.5 29.6 1.0 CA Y:CYS127 4.5 52.6 1.0 CG Y:ASP126 4.6 61.0 1.0 CA Y:HIS155 4.7 63.0 1.0 CA Y:CYS124 4.8 59.3 1.0 N Y:HIS155 4.9 63.0 1.0 CA Y:CYS152 4.9 64.3 1.0

Y.Shen, S.S.Krishnan, M.T.Petassi, M.A.Hancock, J.E.Peters, A.Guarne. Assembly of the TN7 Targeting Complex By A Regulated Stepwise Process. Mol.Cell V. 84 2368 2024.
ISSN: ISSN 1097-2765
PubMed: 38834067
DOI: 10.1016/J.MOLCEL.2024.05.012