Zinc in PDB 8vcj: Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7 Bound to Atpgs and Adp

The structure of Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7 Bound to Atpgs and Adp also contains other interesting chemical elements:

Magnesium

(Mg)

7 atoms

The binding sites of Zinc atom in the Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7 Bound to Atpgs and Adp (pdb code 8vcj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7 Bound to Atpgs and Adp, PDB code: 8vcj:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7 Bound to Atpgs and Adp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7 Bound to Atpgs and Adp within 5.0Å range: probe atom residue distance (Å) B Occ Y:Zn601 b:122.7 occ:1.00 CE1 Y:HIS155 1.8 93.2 1.0 NE2 Y:HIS155 2.1 93.2 1.0 SG Y:CYS124 2.3 70.8 1.0 SG Y:CYS152 2.3 96.0 1.0 SG Y:CYS127 2.3 69.6 1.0 ND1 Y:HIS155 2.9 93.2 1.0 CD2 Y:HIS155 3.2 93.2 1.0 CB Y:CYS152 3.5 96.0 1.0 CG Y:HIS155 3.5 93.2 1.0 CB Y:CYS124 3.6 70.8 1.0 CB Y:CYS127 3.6 69.6 1.0 N Y:CYS127 4.1 69.6 1.0 NE1 Y:TRP144 4.3 54.2 1.0 O Y:HIS155 4.4 93.2 1.0 CA Y:CYS127 4.4 69.6 1.0 CE Y:LYS154 4.7 93.1 1.0 CA Y:CYS152 4.9 96.0 1.0 N Y:HIS155 4.9 93.2 1.0 CA Y:CYS124 4.9 70.8 1.0 CD1 Y:TRP144 4.9 54.2 1.0 CB Y:HIS155 4.9 93.2 1.0

Zinc binding site 2 out of 2 in the Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7 Bound to Atpgs and Adp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryoem Structure of the Tnsc(1-503)-Tnsd(1-318)-Dna Complex in A 7:2:1 Stoichiometry From E. Coli TN7 Bound to Atpgs and Adp within 5.0Å range: probe atom residue distance (Å) B Occ X:Zn601 b:116.3 occ:1.00 ND1 X:HIS155 2.1 99.4 1.0 SG X:CYS152 2.3 98.6 1.0 SG X:CYS124 2.3 76.6 1.0 SG X:CYS127 2.3 73.6 1.0 CE1 X:HIS155 2.9 99.4 1.0 CG X:HIS155 3.1 99.4 1.0 CB X:CYS152 3.4 98.6 1.0 CB X:CYS124 3.5 76.6 1.0 CB X:HIS155 3.5 99.4 1.0 CB X:CYS127 3.7 73.6 1.0 NE2 X:HIS155 4.0 99.4 1.0 N X:CYS127 4.1 73.6 1.0 CD2 X:HIS155 4.1 99.4 1.0 CA X:CYS127 4.4 73.6 1.0 N X:HIS155 4.4 99.4 1.0 CA X:HIS155 4.6 99.4 1.0 NE1 X:TRP144 4.7 59.3 1.0 CB X:ASP126 4.7 79.0 1.0 CA X:CYS124 4.8 76.6 1.0 CA X:CYS152 4.9 98.6 1.0 C X:ASP126 4.9 79.0 1.0

Y.Shen, S.S.Krishnan, M.T.Petassi, M.A.Hancock, J.E.Peters, A.Guarne. Assembly of the TN7 Targeting Complex By A Regulated Stepwise Process. Mol.Cell V. 84 2368 2024.
ISSN: ISSN 1097-2765
PubMed: 38834067
DOI: 10.1016/J.MOLCEL.2024.05.012