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Zinc in PDB 8v4j: Phosphoheptose Isomerase Gmha From Burkholderia Pseudomallei Bound to Inhibitor MUT148233

Protein crystallography data

The structure of Phosphoheptose Isomerase Gmha From Burkholderia Pseudomallei Bound to Inhibitor MUT148233, PDB code: 8v4j was solved by M.S.Junop, C.Brown, R.Szabla, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.83 / 1.31
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 60.972, 60.972, 92.429, 90, 90, 90
R / Rfree (%) 16.1 / 17.3

Other elements in 8v4j:

The structure of Phosphoheptose Isomerase Gmha From Burkholderia Pseudomallei Bound to Inhibitor MUT148233 also contains other interesting chemical elements:

Sodium (Na) 1 atom
Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Phosphoheptose Isomerase Gmha From Burkholderia Pseudomallei Bound to Inhibitor MUT148233 (pdb code 8v4j). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Phosphoheptose Isomerase Gmha From Burkholderia Pseudomallei Bound to Inhibitor MUT148233, PDB code: 8v4j:

Zinc binding site 1 out of 1 in 8v4j

Go back to Zinc Binding Sites List in 8v4j
Zinc binding site 1 out of 1 in the Phosphoheptose Isomerase Gmha From Burkholderia Pseudomallei Bound to Inhibitor MUT148233


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Phosphoheptose Isomerase Gmha From Burkholderia Pseudomallei Bound to Inhibitor MUT148233 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn202

b:9.3
occ:0.60
NE2 A:HIS64 2.1 10.3 1.0
NE2 A:HIS183 2.2 11.3 1.0
OE2 A:GLU68 2.3 16.0 1.0
CE1 A:HIS64 3.0 10.4 1.0
CE1 A:HIS183 3.1 10.3 1.0
CD2 A:HIS183 3.1 10.4 1.0
HE1 A:HIS64 3.1 12.5 1.0
CD2 A:HIS64 3.1 9.8 1.0
CD A:GLU68 3.2 19.2 1.0
HD2 A:HIS183 3.3 12.5 1.0
HE1 A:HIS183 3.3 12.4 1.0
HD2 A:HIS64 3.4 11.8 1.0
OE1 A:GLU68 3.5 21.6 1.0
HE1 A:PHE73 3.6 22.7 1.0
ND1 A:HIS64 4.2 11.8 1.0
ND1 A:HIS183 4.2 9.5 1.0
HD11 A:LEU179 4.2 16.2 1.0
CG A:HIS183 4.2 9.5 1.0
CG A:HIS64 4.3 9.8 1.0
CE1 A:PHE73 4.4 18.9 1.0
HG3 A:GLU68 4.5 21.5 1.0
HD1 A:PHE73 4.5 22.3 1.0
CG A:GLU68 4.5 17.9 1.0
HG2 A:GLU68 4.8 21.5 1.0
CD1 A:PHE73 4.9 18.6 1.0
HD1 A:HIS64 4.9 14.1 1.0
HD1 A:HIS183 5.0 11.4 1.0

Reference:

M.S.Junop, C.Brown, R.Szabla. Potentiating Activity of Gmha Inhibitors on Gram-Negative Bacteria To Be Published.
Page generated: Thu Dec 28 13:45:25 2023

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