Zinc in PDB 8v3r: Structure of CCP5 CLASS2

The binding sites of Zinc atom in the Structure of CCP5 CLASS2 (pdb code 8v3r). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of CCP5 CLASS2, PDB code: 8v3r:

Zinc binding site 1 out of 1 in the Structure of CCP5 CLASS2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of CCP5 CLASS2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn701 b:179.8 occ:1.00 OE2 A:GLU255 1.7 116.2 1.0 ND1 A:HIS252 2.1 112.4 1.0 ND1 A:HIS434 2.1 116.8 1.0 CD A:GLU255 2.4 114.5 1.0 OE1 A:GLU255 2.5 117.5 1.0 CE1 A:HIS252 2.8 113.5 1.0 CE1 A:HIS434 3.0 116.8 1.0 OE1 M:GLU3 3.0 132.0 1.0 CG A:HIS434 3.3 108.2 1.0 CG A:HIS252 3.3 111.3 1.0 CB A:HIS434 3.8 105.3 1.0 CG A:GLU255 3.8 112.7 1.0 O M:GLU1001 3.9 137.6 1.0 NH2 A:ARG303 3.9 117.2 1.0 CB A:HIS252 4.0 105.4 1.0 NE2 A:HIS252 4.0 116.9 1.0 CD M:GLU3 4.1 133.8 1.0 NE2 A:HIS434 4.2 114.3 1.0 CD2 A:HIS252 4.3 118.4 1.0 CD2 A:HIS434 4.3 107.6 1.0 O A:GLY435 4.4 112.8 1.0 C M:GLU1001 4.5 140.5 1.0 NH1 A:ARG303 4.6 116.7 1.0 CA A:HIS434 4.6 103.2 1.0 N A:GLY435 4.6 102.4 1.0 CZ A:ARG303 4.6 117.8 1.0 CA M:GLU1001 4.7 140.1 1.0 CB A:GLU255 4.9 111.2 1.0 N M:GLU1001 4.9 135.5 1.0

J.Chen, E.A.Zehr, J.M.Gruschus, A.Szyk, Y.Liu, M.E.Tanner, N.Tjandra, A.Roll-Mecak. Tubulin Code Eraser CCP5 Binds Branch Glutamates By Substrate Deformation Nature 2024.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-024-07699-0