Zinc in PDB 8v32: Tnsd-Tnsc-Dna Complex

The structure of Tnsd-Tnsc-Dna Complex also contains other interesting chemical elements:

Magnesium

(Mg)

7 atoms

The binding sites of Zinc atom in the Tnsd-Tnsc-Dna Complex (pdb code 8v32). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Tnsd-Tnsc-Dna Complex, PDB code: 8v32:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Tnsd-Tnsc-Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Tnsd-Tnsc-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ J:Zn501 b:130.6 occ:1.00 ND1 J:HIS170 2.1 85.0 1.0 SG J:CYS142 2.3 82.6 1.0 SG J:CYS167 2.3 78.2 1.0 SG J:CYS139 2.3 74.3 1.0 CE1 J:HIS170 3.0 83.9 1.0 CG J:HIS170 3.1 83.1 1.0 CB J:CYS139 3.2 60.9 1.0 CB J:CYS167 3.3 79.9 1.0 CB J:CYS142 3.4 73.5 1.0 CB J:HIS170 3.5 81.2 1.0 N J:CYS142 3.8 76.4 1.0 CA J:CYS142 4.0 72.6 1.0 NE2 J:HIS170 4.0 84.6 1.0 CD2 J:HIS170 4.1 84.2 1.0 N J:HIS170 4.3 79.1 1.0 CA J:HIS170 4.5 80.0 1.0 CA J:CYS139 4.7 61.4 1.0 C J:ILE141 4.7 79.7 1.0 CB J:GLN169 4.7 79.0 1.0 CA J:CYS167 4.7 76.7 1.0 CB J:ILE141 4.8 76.8 1.0 O J:CYS139 4.9 71.1 1.0

Zinc binding site 2 out of 2 in the Tnsd-Tnsc-Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Tnsd-Tnsc-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ J:Zn502 b:124.0 occ:1.00 SG J:CYS200 2.3 84.7 1.0 SG J:CYS178 2.3 90.7 1.0 SG J:CYS197 2.3 80.7 1.0 SG J:CYS181 2.3 88.1 1.0 CB J:CYS197 2.9 65.8 1.0 CB J:CYS178 3.0 79.8 1.0 CB J:CYS200 3.6 73.5 1.0 CB J:CYS181 3.9 77.7 1.0 N J:CYS200 4.0 73.4 1.0 N J:CYS181 4.3 81.6 1.0 O J:CYS181 4.4 80.9 1.0 CA J:CYS197 4.4 60.0 1.0 CA J:CYS200 4.4 72.3 1.0 CA J:CYS178 4.5 78.0 1.0 CA J:CYS181 4.6 77.8 1.0 C J:LYS199 4.8 69.3 1.0 CB J:LYS199 4.9 66.0 1.0 C J:CYS181 5.0 76.8 1.0 CB J:HIS180 5.0 69.8 1.0

L.Chang, S.Wang. Structure of Tnsabcd Transpososome Reveals Mechanisms of Targeted Dna Transposition Cell(Cambridge,Mass.) 2024.
ISSN: ISSN 0092-8674