Zinc in PDB 8v1j: Structure of An Allelic Variant of Puccinia Graminis F. Sp. Tritici (Pgt) Effector AVRSR27 (AVRSR27-1)
Protein crystallography data
The structure of Structure of An Allelic Variant of Puccinia Graminis F. Sp. Tritici (Pgt) Effector AVRSR27 (AVRSR27-1), PDB code: 8v1j
was solved by
M.A.Outram,
S.J.Williams,
D.J.Ericsson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
43.59 /
2.42
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
43.65,
34.3,
70.74,
90,
92.9,
90
|
R / Rfree (%)
|
20.8 /
25.3
|
Zinc Binding Sites:
The binding sites of Zinc atom in the Structure of An Allelic Variant of Puccinia Graminis F. Sp. Tritici (Pgt) Effector AVRSR27 (AVRSR27-1)
(pdb code 8v1j). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the
Structure of An Allelic Variant of Puccinia Graminis F. Sp. Tritici (Pgt) Effector AVRSR27 (AVRSR27-1), PDB code: 8v1j:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Zinc binding site 1 out
of 8 in 8v1j
Go back to
Zinc Binding Sites List in 8v1j
Zinc binding site 1 out
of 8 in the Structure of An Allelic Variant of Puccinia Graminis F. Sp. Tritici (Pgt) Effector AVRSR27 (AVRSR27-1)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Structure of An Allelic Variant of Puccinia Graminis F. Sp. Tritici (Pgt) Effector AVRSR27 (AVRSR27-1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn200
b:29.5
occ:1.00
|
NE2
|
A:HIS141
|
2.1
|
22.5
|
1.0
|
SG
|
A:CYS37
|
2.3
|
32.1
|
1.0
|
SG
|
A:CYS69
|
2.3
|
24.6
|
1.0
|
SG
|
A:CYS66
|
2.3
|
20.8
|
1.0
|
HB3
|
A:CYS69
|
2.7
|
23.0
|
1.0
|
HB3
|
A:CYS37
|
2.8
|
27.3
|
1.0
|
H
|
A:CYS69
|
3.0
|
26.5
|
1.0
|
CB
|
A:CYS37
|
3.0
|
22.7
|
1.0
|
CE1
|
A:HIS141
|
3.0
|
27.2
|
1.0
|
HB3
|
A:CYS66
|
3.0
|
26.1
|
1.0
|
CB
|
A:CYS69
|
3.1
|
19.2
|
1.0
|
CD2
|
A:HIS141
|
3.1
|
25.7
|
1.0
|
HE1
|
A:HIS141
|
3.2
|
32.7
|
1.0
|
HB2
|
A:CYS37
|
3.2
|
27.3
|
1.0
|
CB
|
A:CYS66
|
3.2
|
21.7
|
1.0
|
HD2
|
A:HIS141
|
3.3
|
30.8
|
1.0
|
HB2
|
A:SER68
|
3.3
|
26.7
|
1.0
|
HB2
|
A:CYS66
|
3.4
|
26.1
|
1.0
|
HA
|
A:PRO40
|
3.5
|
30.9
|
1.0
|
N
|
A:CYS69
|
3.5
|
22.1
|
1.0
|
HB2
|
A:CYS69
|
3.8
|
23.0
|
1.0
|
CA
|
A:CYS69
|
3.9
|
26.7
|
1.0
|
ND1
|
A:HIS141
|
4.1
|
27.0
|
1.0
|
CG
|
A:HIS141
|
4.2
|
26.3
|
1.0
|
CB
|
A:SER68
|
4.3
|
22.3
|
1.0
|
CA
|
A:PRO40
|
4.4
|
25.8
|
1.0
|
O
|
A:SER39
|
4.4
|
28.6
|
1.0
|
CA
|
A:CYS37
|
4.4
|
28.7
|
1.0
|
H
|
A:SER68
|
4.4
|
24.0
|
1.0
|
C
|
A:SER68
|
4.5
|
20.9
|
1.0
|
H
|
A:SER41
|
4.6
|
42.4
|
1.0
|
HB3
|
A:SER68
|
4.6
|
26.7
|
1.0
|
HB3
|
A:PRO40
|
4.6
|
30.2
|
1.0
|
CA
|
A:CYS66
|
4.6
|
28.1
|
1.0
|
HA
|
A:CYS69
|
4.6
|
32.0
|
1.0
|
H
|
A:ARG70
|
4.7
|
35.7
|
1.0
|
N
|
A:PRO40
|
4.7
|
24.1
|
1.0
|
C
|
A:SER39
|
4.8
|
26.6
|
1.0
|
O
|
A:CYS37
|
4.8
|
26.8
|
1.0
|
CA
|
A:SER68
|
4.8
|
18.6
|
1.0
|
H
|
A:SER39
|
4.8
|
32.8
|
1.0
|
C
|
A:CYS37
|
4.8
|
31.5
|
1.0
|
C
|
A:CYS69
|
4.8
|
25.3
|
1.0
|
N
|
A:SER68
|
4.9
|
20.0
|
1.0
|
HD1
|
A:HIS141
|
4.9
|
32.4
|
1.0
|
HZ2
|
A:LYS71
|
4.9
|
55.9
|
1.0
|
O
|
A:CYS66
|
4.9
|
22.7
|
1.0
|
HA
|
A:CYS37
|
4.9
|
34.4
|
1.0
|
C
|
A:CYS66
|
4.9
|
20.5
|
1.0
|
H
|
A:LYS71
|
5.0
|
26.0
|
1.0
|
H
|
A:CYS37
|
5.0
|
39.4
|
1.0
|
|
Zinc binding site 2 out
of 8 in 8v1j
Go back to
Zinc Binding Sites List in 8v1j
Zinc binding site 2 out
of 8 in the Structure of An Allelic Variant of Puccinia Graminis F. Sp. Tritici (Pgt) Effector AVRSR27 (AVRSR27-1)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Structure of An Allelic Variant of Puccinia Graminis F. Sp. Tritici (Pgt) Effector AVRSR27 (AVRSR27-1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn201
b:31.9
occ:1.00
|
SG
|
A:CYS79
|
2.3
|
23.7
|
1.0
|
SG
|
A:CYS84
|
2.3
|
24.1
|
1.0
|
SG
|
A:CYS54
|
2.4
|
26.3
|
1.0
|
SG
|
A:CYS51
|
2.4
|
21.0
|
1.0
|
H
|
A:CYS54
|
2.8
|
33.6
|
1.0
|
HB3
|
A:CYS51
|
3.0
|
32.9
|
1.0
|
HB3
|
A:CYS54
|
3.0
|
28.1
|
1.0
|
CB
|
A:CYS51
|
3.2
|
27.4
|
1.0
|
HB2
|
A:CYS84
|
3.2
|
32.4
|
1.0
|
HB2
|
A:CYS79
|
3.2
|
24.5
|
1.0
|
CB
|
A:CYS84
|
3.2
|
27.0
|
1.0
|
CB
|
A:CYS79
|
3.2
|
20.4
|
1.0
|
HB
|
A:THR81
|
3.3
|
36.3
|
1.0
|
HB3
|
A:CYS84
|
3.3
|
32.4
|
1.0
|
CB
|
A:CYS54
|
3.3
|
23.5
|
1.0
|
HB2
|
A:CYS51
|
3.3
|
32.9
|
1.0
|
HB3
|
A:CYS79
|
3.4
|
24.5
|
1.0
|
HB3
|
A:ALA86
|
3.4
|
22.6
|
1.0
|
HG1
|
A:THR81
|
3.5
|
33.4
|
1.0
|
HB2
|
A:SER53
|
3.6
|
32.1
|
1.0
|
N
|
A:CYS54
|
3.6
|
28.0
|
1.0
|
OG1
|
A:THR81
|
3.9
|
27.8
|
1.0
|
HG1
|
A:THR58
|
3.9
|
38.7
|
1.0
|
CB
|
A:THR81
|
4.0
|
30.3
|
1.0
|
CA
|
A:CYS54
|
4.1
|
28.5
|
1.0
|
HB2
|
A:CYS54
|
4.1
|
28.1
|
1.0
|
OG1
|
A:THR58
|
4.2
|
32.2
|
1.0
|
H
|
A:THR81
|
4.2
|
32.4
|
1.0
|
CB
|
A:ALA86
|
4.4
|
18.8
|
1.0
|
H
|
A:ALA86
|
4.4
|
22.5
|
1.0
|
H
|
A:SER53
|
4.5
|
43.9
|
1.0
|
CB
|
A:SER53
|
4.5
|
26.8
|
1.0
|
H
|
A:GLN55
|
4.6
|
39.1
|
1.0
|
HG21
|
A:THR81
|
4.6
|
29.6
|
1.0
|
CA
|
A:CYS51
|
4.6
|
26.0
|
1.0
|
HB2
|
A:ALA86
|
4.7
|
22.6
|
1.0
|
CA
|
A:CYS84
|
4.7
|
28.1
|
1.0
|
CA
|
A:CYS79
|
4.7
|
26.5
|
1.0
|
H
|
A:LEU56
|
4.7
|
37.8
|
1.0
|
C
|
A:SER53
|
4.8
|
31.6
|
1.0
|
HA
|
A:CYS54
|
4.8
|
34.2
|
1.0
|
HB1
|
A:ALA86
|
4.8
|
22.6
|
1.0
|
HB3
|
A:SER53
|
4.8
|
32.1
|
1.0
|
CG2
|
A:THR81
|
4.9
|
24.6
|
1.0
|
HA
|
A:CYS79
|
4.9
|
31.8
|
1.0
|
HA
|
A:CYS84
|
4.9
|
33.8
|
1.0
|
C
|
A:CYS54
|
4.9
|
24.0
|
1.0
|
HB2
|
A:LEU56
|
5.0
|
38.5
|
1.0
|
N
|
A:THR81
|
5.0
|
27.0
|
1.0
|
|
Zinc binding site 3 out
of 8 in 8v1j
Go back to
Zinc Binding Sites List in 8v1j
Zinc binding site 3 out
of 8 in the Structure of An Allelic Variant of Puccinia Graminis F. Sp. Tritici (Pgt) Effector AVRSR27 (AVRSR27-1)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Structure of An Allelic Variant of Puccinia Graminis F. Sp. Tritici (Pgt) Effector AVRSR27 (AVRSR27-1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn202
b:30.2
occ:1.00
|
ND1
|
A:HIS89
|
2.1
|
27.9
|
1.0
|
SG
|
A:CYS93
|
2.3
|
32.5
|
1.0
|
SG
|
A:CYS122
|
2.4
|
31.4
|
1.0
|
HB3
|
A:CYS125
|
2.4
|
43.2
|
1.0
|
SG
|
A:CYS125
|
2.4
|
26.5
|
1.0
|
CB
|
A:CYS125
|
2.9
|
36.0
|
1.0
|
CE1
|
A:HIS89
|
2.9
|
25.2
|
1.0
|
HE1
|
A:HIS89
|
3.0
|
30.3
|
1.0
|
HB3
|
A:CYS122
|
3.0
|
26.4
|
1.0
|
HB2
|
A:CYS93
|
3.1
|
33.5
|
1.0
|
CB
|
A:CYS122
|
3.1
|
22.0
|
1.0
|
HB2
|
A:CYS122
|
3.1
|
26.4
|
1.0
|
HB3
|
A:HIS89
|
3.1
|
27.5
|
1.0
|
CG
|
A:HIS89
|
3.2
|
28.5
|
1.0
|
CB
|
A:CYS93
|
3.3
|
27.9
|
1.0
|
HA
|
A:PRO96
|
3.4
|
50.1
|
1.0
|
HB2
|
A:CYS125
|
3.5
|
43.2
|
1.0
|
HG
|
A:CYS125
|
3.6
|
31.8
|
1.0
|
CB
|
A:HIS89
|
3.7
|
22.9
|
1.0
|
HB3
|
A:CYS93
|
3.7
|
33.5
|
1.0
|
N
|
A:CYS125
|
3.9
|
33.0
|
1.0
|
CA
|
A:CYS125
|
4.0
|
30.6
|
1.0
|
HA
|
A:HIS89
|
4.0
|
26.4
|
1.0
|
NE2
|
A:HIS89
|
4.1
|
28.3
|
1.0
|
CD2
|
A:HIS89
|
4.2
|
25.5
|
1.0
|
H
|
A:LYS97
|
4.3
|
52.0
|
1.0
|
H
|
A:LYS90
|
4.3
|
29.2
|
1.0
|
CA
|
A:PRO96
|
4.3
|
41.7
|
1.0
|
HB3
|
A:ASN124
|
4.4
|
61.5
|
1.0
|
CA
|
A:HIS89
|
4.4
|
22.0
|
1.0
|
HB2
|
A:HIS89
|
4.4
|
27.5
|
1.0
|
O
|
A:GLU95
|
4.5
|
55.2
|
1.0
|
CA
|
A:CYS122
|
4.6
|
23.9
|
1.0
|
HA
|
A:CYS93
|
4.6
|
46.4
|
1.0
|
CA
|
A:CYS93
|
4.6
|
38.7
|
1.0
|
H
|
A:LYS126
|
4.6
|
34.2
|
1.0
|
HG3
|
A:PRO96
|
4.6
|
54.4
|
1.0
|
HA
|
A:CYS125
|
4.7
|
36.7
|
1.0
|
N
|
A:PRO96
|
4.7
|
51.5
|
1.0
|
C
|
A:CYS125
|
4.8
|
30.1
|
1.0
|
H
|
A:ASN127
|
4.8
|
37.2
|
1.0
|
HD22
|
A:ASN124
|
4.8
|
88.4
|
1.0
|
HB3
|
A:PRO96
|
4.8
|
52.5
|
1.0
|
HE2
|
A:HIS89
|
4.8
|
33.9
|
1.0
|
HZ3
|
A:TRP88
|
4.8
|
31.7
|
1.0
|
H
|
A:ASN124
|
4.8
|
57.2
|
1.0
|
HB2
|
A:ASN127
|
4.8
|
33.3
|
1.0
|
N
|
A:LYS90
|
4.9
|
24.3
|
1.0
|
C
|
A:GLU95
|
4.9
|
57.1
|
1.0
|
HA
|
A:CYS122
|
4.9
|
28.6
|
1.0
|
N
|
A:LYS126
|
5.0
|
28.5
|
1.0
|
N
|
A:LYS97
|
5.0
|
43.3
|
1.0
|
|
Zinc binding site 4 out
of 8 in 8v1j
Go back to
Zinc Binding Sites List in 8v1j
Zinc binding site 4 out
of 8 in the Structure of An Allelic Variant of Puccinia Graminis F. Sp. Tritici (Pgt) Effector AVRSR27 (AVRSR27-1)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Structure of An Allelic Variant of Puccinia Graminis F. Sp. Tritici (Pgt) Effector AVRSR27 (AVRSR27-1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn203
b:28.7
occ:1.00
|
SG
|
A:CYS135
|
2.2
|
29.5
|
1.0
|
SG
|
A:CYS110
|
2.3
|
22.1
|
1.0
|
SG
|
A:CYS107
|
2.3
|
29.4
|
1.0
|
SG
|
A:CYS140
|
2.4
|
24.8
|
1.0
|
HB3
|
A:CYS107
|
2.9
|
33.2
|
1.0
|
CB
|
A:CYS107
|
2.9
|
27.7
|
1.0
|
HB2
|
A:CYS107
|
3.0
|
33.2
|
1.0
|
H
|
A:CYS110
|
3.1
|
34.1
|
1.0
|
CB
|
A:CYS135
|
3.1
|
30.5
|
1.0
|
HB3
|
A:CYS135
|
3.1
|
36.6
|
1.0
|
HB2
|
A:CYS140
|
3.1
|
31.6
|
1.0
|
HB2
|
A:CYS135
|
3.2
|
36.6
|
1.0
|
HB3
|
A:CYS110
|
3.2
|
28.1
|
1.0
|
HG
|
A:SER137
|
3.3
|
27.4
|
1.0
|
CB
|
A:CYS140
|
3.4
|
26.3
|
1.0
|
CB
|
A:CYS110
|
3.4
|
23.4
|
1.0
|
HB2
|
A:ASN109
|
3.5
|
55.2
|
1.0
|
HG1
|
A:THR114
|
3.7
|
38.3
|
1.0
|
OG
|
A:SER137
|
3.7
|
22.9
|
1.0
|
N
|
A:CYS110
|
3.7
|
28.4
|
1.0
|
HB3
|
A:CYS140
|
3.7
|
31.6
|
1.0
|
H
|
A:ASN109
|
4.1
|
46.9
|
1.0
|
CA
|
A:CYS110
|
4.1
|
25.9
|
1.0
|
HB3
|
A:SER137
|
4.1
|
30.5
|
1.0
|
HB2
|
A:CYS110
|
4.2
|
28.1
|
1.0
|
OG1
|
A:THR114
|
4.2
|
31.9
|
1.0
|
CA
|
A:CYS107
|
4.4
|
32.7
|
1.0
|
CB
|
A:ASN109
|
4.4
|
46.0
|
1.0
|
H
|
A:SER137
|
4.5
|
30.8
|
1.0
|
H
|
A:CYS140
|
4.5
|
30.0
|
1.0
|
CB
|
A:SER137
|
4.5
|
25.4
|
1.0
|
CA
|
A:CYS135
|
4.6
|
28.0
|
1.0
|
HD22
|
A:ASN109
|
4.6
|
71.5
|
1.0
|
H
|
A:GLN112
|
4.6
|
35.0
|
1.0
|
H
|
A:GLN111
|
4.6
|
29.0
|
1.0
|
C
|
A:ASN109
|
4.7
|
32.2
|
1.0
|
CA
|
A:CYS140
|
4.7
|
27.4
|
1.0
|
HB2
|
A:GLN112
|
4.7
|
33.6
|
1.0
|
HB3
|
A:ASN109
|
4.8
|
55.2
|
1.0
|
HA
|
A:CYS107
|
4.8
|
39.2
|
1.0
|
N
|
A:ASN109
|
4.8
|
39.1
|
1.0
|
HA
|
A:CYS135
|
4.9
|
33.6
|
1.0
|
C
|
A:CYS110
|
4.9
|
21.7
|
1.0
|
CA
|
A:ASN109
|
4.9
|
39.1
|
1.0
|
N
|
A:CYS140
|
4.9
|
25.0
|
1.0
|
HA
|
A:CYS110
|
4.9
|
31.0
|
1.0
|
HB2
|
A:LYS115
|
4.9
|
33.5
|
1.0
|
C
|
A:CYS107
|
5.0
|
33.7
|
1.0
|
HA
|
A:CYS140
|
5.0
|
32.9
|
1.0
|
|
Zinc binding site 5 out
of 8 in 8v1j
Go back to
Zinc Binding Sites List in 8v1j
Zinc binding site 5 out
of 8 in the Structure of An Allelic Variant of Puccinia Graminis F. Sp. Tritici (Pgt) Effector AVRSR27 (AVRSR27-1)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Structure of An Allelic Variant of Puccinia Graminis F. Sp. Tritici (Pgt) Effector AVRSR27 (AVRSR27-1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn200
b:27.6
occ:1.00
|
NE2
|
B:HIS141
|
2.1
|
25.6
|
1.0
|
SG
|
B:CYS69
|
2.2
|
20.3
|
1.0
|
SG
|
B:CYS66
|
2.3
|
26.4
|
1.0
|
SG
|
B:CYS37
|
2.3
|
29.0
|
1.0
|
HB3
|
B:CYS37
|
2.9
|
48.4
|
1.0
|
HB3
|
B:CYS66
|
2.9
|
25.3
|
1.0
|
H
|
B:CYS69
|
2.9
|
28.8
|
1.0
|
CE1
|
B:HIS141
|
3.0
|
29.7
|
1.0
|
CD2
|
B:HIS141
|
3.0
|
20.9
|
1.0
|
CB
|
B:CYS37
|
3.1
|
40.4
|
1.0
|
CB
|
B:CYS66
|
3.1
|
21.1
|
1.0
|
HB3
|
B:CYS69
|
3.1
|
27.2
|
1.0
|
HE1
|
B:HIS141
|
3.2
|
35.6
|
1.0
|
HD2
|
B:HIS141
|
3.2
|
25.0
|
1.0
|
HB2
|
B:CYS37
|
3.3
|
48.4
|
1.0
|
HB2
|
B:CYS66
|
3.3
|
25.3
|
1.0
|
CB
|
B:CYS69
|
3.3
|
22.6
|
1.0
|
HB2
|
B:SER68
|
3.4
|
34.8
|
1.0
|
HA
|
B:PRO40
|
3.5
|
45.3
|
1.0
|
N
|
B:CYS69
|
3.6
|
24.0
|
1.0
|
CA
|
B:CYS69
|
4.0
|
22.5
|
1.0
|
HB2
|
B:CYS69
|
4.1
|
27.2
|
1.0
|
ND1
|
B:HIS141
|
4.1
|
29.6
|
1.0
|
CG
|
B:HIS141
|
4.2
|
30.9
|
1.0
|
H
|
B:SER68
|
4.2
|
35.1
|
1.0
|
CB
|
B:SER68
|
4.3
|
29.0
|
1.0
|
O
|
B:SER39
|
4.4
|
38.7
|
1.0
|
CA
|
B:PRO40
|
4.4
|
37.8
|
1.0
|
CA
|
B:CYS37
|
4.5
|
40.1
|
1.0
|
CA
|
B:CYS66
|
4.5
|
25.8
|
1.0
|
H
|
B:ARG70
|
4.5
|
28.2
|
1.0
|
H
|
B:SER41
|
4.5
|
45.8
|
1.0
|
C
|
B:SER68
|
4.6
|
27.8
|
1.0
|
HB3
|
B:SER68
|
4.6
|
34.8
|
1.0
|
HB3
|
B:PRO40
|
4.6
|
39.5
|
1.0
|
H
|
B:SER39
|
4.7
|
44.4
|
1.0
|
C
|
B:SER39
|
4.7
|
33.6
|
1.0
|
N
|
B:PRO40
|
4.8
|
35.8
|
1.0
|
HA
|
B:CYS69
|
4.8
|
27.0
|
1.0
|
O
|
B:CYS37
|
4.8
|
36.5
|
1.0
|
CA
|
B:SER68
|
4.8
|
27.0
|
1.0
|
N
|
B:SER68
|
4.8
|
29.3
|
1.0
|
C
|
B:CYS69
|
4.9
|
17.1
|
1.0
|
C
|
B:CYS66
|
4.9
|
23.5
|
1.0
|
C
|
B:CYS37
|
4.9
|
30.3
|
1.0
|
H
|
B:LYS71
|
4.9
|
34.5
|
1.0
|
HD1
|
B:HIS141
|
4.9
|
35.5
|
1.0
|
HA
|
B:CYS66
|
4.9
|
31.0
|
1.0
|
O
|
B:CYS66
|
4.9
|
21.5
|
1.0
|
HA
|
B:CYS37
|
4.9
|
48.1
|
1.0
|
N
|
B:ARG70
|
5.0
|
23.5
|
1.0
|
|
Zinc binding site 6 out
of 8 in 8v1j
Go back to
Zinc Binding Sites List in 8v1j
Zinc binding site 6 out
of 8 in the Structure of An Allelic Variant of Puccinia Graminis F. Sp. Tritici (Pgt) Effector AVRSR27 (AVRSR27-1)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Structure of An Allelic Variant of Puccinia Graminis F. Sp. Tritici (Pgt) Effector AVRSR27 (AVRSR27-1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn201
b:27.5
occ:1.00
|
ND1
|
B:HIS89
|
2.0
|
23.1
|
1.0
|
SG
|
B:CYS122
|
2.3
|
24.6
|
1.0
|
SG
|
B:CYS125
|
2.3
|
21.6
|
1.0
|
SG
|
B:CYS93
|
2.3
|
23.4
|
1.0
|
CE1
|
B:HIS89
|
2.8
|
22.6
|
1.0
|
HE1
|
B:HIS89
|
2.9
|
27.2
|
1.0
|
HB3
|
B:CYS125
|
3.0
|
29.6
|
1.0
|
HB3
|
B:CYS122
|
3.0
|
32.1
|
1.0
|
HB2
|
B:CYS122
|
3.0
|
32.1
|
1.0
|
CB
|
B:CYS122
|
3.0
|
26.8
|
1.0
|
HB3
|
B:HIS89
|
3.1
|
28.7
|
1.0
|
CG
|
B:HIS89
|
3.1
|
19.6
|
1.0
|
HB2
|
B:CYS93
|
3.2
|
32.8
|
1.0
|
H
|
B:CYS125
|
3.2
|
33.2
|
1.0
|
CB
|
B:CYS125
|
3.3
|
24.6
|
1.0
|
HA
|
B:PRO96
|
3.3
|
21.9
|
1.0
|
CB
|
B:CYS93
|
3.4
|
27.3
|
1.0
|
CB
|
B:HIS89
|
3.6
|
23.9
|
1.0
|
HB3
|
B:CYS93
|
3.7
|
32.8
|
1.0
|
N
|
B:CYS125
|
4.0
|
27.6
|
1.0
|
HA
|
B:HIS89
|
4.0
|
24.7
|
1.0
|
HB2
|
B:CYS125
|
4.0
|
29.6
|
1.0
|
NE2
|
B:HIS89
|
4.0
|
24.0
|
1.0
|
H
|
B:LYS90
|
4.2
|
25.6
|
1.0
|
CD2
|
B:HIS89
|
4.2
|
25.0
|
1.0
|
HB2
|
B:ASN124
|
4.2
|
31.6
|
1.0
|
CA
|
B:CYS125
|
4.2
|
25.0
|
1.0
|
CA
|
B:PRO96
|
4.2
|
18.3
|
1.0
|
H
|
B:LYS97
|
4.4
|
30.6
|
1.0
|
HG3
|
B:PRO96
|
4.4
|
24.6
|
1.0
|
CA
|
B:HIS89
|
4.4
|
20.6
|
1.0
|
HB2
|
B:HIS89
|
4.4
|
28.7
|
1.0
|
HB3
|
B:PRO96
|
4.5
|
27.4
|
1.0
|
CA
|
B:CYS122
|
4.5
|
31.5
|
1.0
|
O
|
B:GLU95
|
4.7
|
29.1
|
1.0
|
HZ3
|
B:TRP88
|
4.7
|
26.4
|
1.0
|
N
|
B:PRO96
|
4.7
|
23.0
|
1.0
|
CA
|
B:CYS93
|
4.7
|
30.9
|
1.0
|
HA
|
B:CYS93
|
4.7
|
37.1
|
1.0
|
HB2
|
B:ASN127
|
4.8
|
22.3
|
1.0
|
HE2
|
B:HIS89
|
4.8
|
28.8
|
1.0
|
H
|
B:ASN124
|
4.8
|
36.7
|
1.0
|
N
|
B:LYS90
|
4.8
|
21.3
|
1.0
|
CB
|
B:PRO96
|
4.8
|
22.9
|
1.0
|
HA
|
B:CYS122
|
4.8
|
37.8
|
1.0
|
H
|
B:ASN127
|
4.8
|
36.3
|
1.0
|
H
|
B:LYS126
|
4.8
|
29.8
|
1.0
|
C
|
B:GLU95
|
4.9
|
25.4
|
1.0
|
HA
|
B:CYS125
|
5.0
|
30.0
|
1.0
|
CB
|
B:ASN124
|
5.0
|
26.3
|
1.0
|
CG
|
B:PRO96
|
5.0
|
20.5
|
1.0
|
C
|
B:CYS125
|
5.0
|
27.9
|
1.0
|
|
Zinc binding site 7 out
of 8 in 8v1j
Go back to
Zinc Binding Sites List in 8v1j
Zinc binding site 7 out
of 8 in the Structure of An Allelic Variant of Puccinia Graminis F. Sp. Tritici (Pgt) Effector AVRSR27 (AVRSR27-1)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Structure of An Allelic Variant of Puccinia Graminis F. Sp. Tritici (Pgt) Effector AVRSR27 (AVRSR27-1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn202
b:30.5
occ:1.00
|
SG
|
B:CYS140
|
2.3
|
26.8
|
1.0
|
SG
|
B:CYS107
|
2.3
|
27.9
|
1.0
|
SG
|
B:CYS110
|
2.3
|
30.2
|
1.0
|
SG
|
B:CYS135
|
2.3
|
24.4
|
1.0
|
HB3
|
B:CYS110
|
2.7
|
37.7
|
1.0
|
HB2
|
B:CYS140
|
3.0
|
31.2
|
1.0
|
CB
|
B:CYS110
|
3.1
|
31.4
|
1.0
|
HB3
|
B:CYS135
|
3.1
|
33.7
|
1.0
|
H
|
B:CYS110
|
3.1
|
34.2
|
1.0
|
HB3
|
B:CYS107
|
3.2
|
31.2
|
1.0
|
CB
|
B:CYS135
|
3.2
|
28.1
|
1.0
|
CB
|
B:CYS140
|
3.2
|
26.0
|
1.0
|
CB
|
B:CYS107
|
3.2
|
26.0
|
1.0
|
HB2
|
B:CYS135
|
3.3
|
33.7
|
1.0
|
HB2
|
B:CYS107
|
3.4
|
31.2
|
1.0
|
HB3
|
B:SER137
|
3.5
|
38.9
|
1.0
|
HB3
|
B:CYS140
|
3.5
|
31.2
|
1.0
|
N
|
B:CYS110
|
3.6
|
28.5
|
1.0
|
HB2
|
B:ASN109
|
3.7
|
54.9
|
1.0
|
HG1
|
B:THR114
|
3.7
|
41.7
|
1.0
|
HB2
|
B:CYS110
|
3.8
|
37.7
|
1.0
|
HB2
|
B:SER137
|
3.9
|
38.9
|
1.0
|
CA
|
B:CYS110
|
3.9
|
28.7
|
1.0
|
OG1
|
B:THR114
|
4.1
|
34.8
|
1.0
|
CB
|
B:SER137
|
4.1
|
32.4
|
1.0
|
H
|
B:SER137
|
4.3
|
41.2
|
1.0
|
H
|
B:ASN109
|
4.3
|
36.5
|
1.0
|
C
|
B:ASN109
|
4.5
|
30.2
|
1.0
|
H
|
B:CYS140
|
4.5
|
32.9
|
1.0
|
CA
|
B:CYS140
|
4.6
|
27.9
|
1.0
|
CB
|
B:ASN109
|
4.6
|
45.8
|
1.0
|
CA
|
B:CYS135
|
4.6
|
33.6
|
1.0
|
HA
|
B:CYS110
|
4.7
|
34.5
|
1.0
|
CA
|
B:CYS107
|
4.7
|
28.3
|
1.0
|
H
|
B:GLN112
|
4.7
|
41.5
|
1.0
|
HB2
|
B:GLU139
|
4.8
|
44.0
|
1.0
|
C
|
B:CYS110
|
4.8
|
30.0
|
1.0
|
N
|
B:CYS140
|
4.8
|
27.4
|
1.0
|
HB2
|
B:LYS115
|
4.8
|
38.4
|
1.0
|
H
|
B:GLN111
|
4.8
|
46.4
|
1.0
|
N
|
B:ASN109
|
4.9
|
30.4
|
1.0
|
CA
|
B:ASN109
|
4.9
|
39.2
|
1.0
|
HB3
|
B:ASN109
|
4.9
|
54.9
|
1.0
|
HA
|
B:CYS140
|
4.9
|
33.5
|
1.0
|
HA
|
B:CYS135
|
5.0
|
40.4
|
1.0
|
OG
|
B:SER137
|
5.0
|
53.3
|
1.0
|
HB2
|
B:GLN112
|
5.0
|
47.9
|
1.0
|
HA
|
B:CYS107
|
5.0
|
34.0
|
1.0
|
|
Zinc binding site 8 out
of 8 in 8v1j
Go back to
Zinc Binding Sites List in 8v1j
Zinc binding site 8 out
of 8 in the Structure of An Allelic Variant of Puccinia Graminis F. Sp. Tritici (Pgt) Effector AVRSR27 (AVRSR27-1)
Mono view
Stereo pair view
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A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Structure of An Allelic Variant of Puccinia Graminis F. Sp. Tritici (Pgt) Effector AVRSR27 (AVRSR27-1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn203
b:31.3
occ:1.00
|
SG
|
B:CYS84
|
2.3
|
23.4
|
1.0
|
SG
|
B:CYS51
|
2.3
|
20.7
|
1.0
|
SG
|
B:CYS79
|
2.4
|
20.6
|
1.0
|
SG
|
B:CYS54
|
2.4
|
31.5
|
1.0
|
H
|
B:CYS54
|
2.9
|
31.1
|
1.0
|
HB3
|
B:CYS51
|
3.0
|
25.0
|
1.0
|
HB3
|
B:CYS54
|
3.1
|
25.2
|
1.0
|
CB
|
B:CYS51
|
3.2
|
20.8
|
1.0
|
HB2
|
B:CYS79
|
3.3
|
31.7
|
1.0
|
CB
|
B:CYS54
|
3.3
|
21.0
|
1.0
|
HB2
|
B:CYS51
|
3.3
|
25.0
|
1.0
|
HB3
|
B:ALA86
|
3.4
|
28.4
|
1.0
|
CB
|
B:CYS79
|
3.4
|
26.4
|
1.0
|
HB2
|
B:SER53
|
3.4
|
29.6
|
1.0
|
CB
|
B:CYS84
|
3.4
|
27.2
|
1.0
|
HB2
|
B:CYS84
|
3.5
|
32.6
|
1.0
|
HB
|
B:THR81
|
3.5
|
32.2
|
1.0
|
HB3
|
B:CYS79
|
3.5
|
31.7
|
1.0
|
HB3
|
B:CYS84
|
3.6
|
32.6
|
1.0
|
N
|
B:CYS54
|
3.6
|
25.9
|
1.0
|
HG1
|
B:THR58
|
3.7
|
25.9
|
1.0
|
HG1
|
B:THR81
|
4.0
|
39.2
|
1.0
|
CA
|
B:CYS54
|
4.0
|
29.0
|
1.0
|
HB2
|
B:CYS54
|
4.1
|
25.2
|
1.0
|
OG1
|
B:THR58
|
4.2
|
21.6
|
1.0
|
H
|
B:SER53
|
4.3
|
31.2
|
1.0
|
CB
|
B:ALA86
|
4.3
|
23.6
|
1.0
|
CB
|
B:THR81
|
4.3
|
26.8
|
1.0
|
CB
|
B:SER53
|
4.3
|
24.6
|
1.0
|
OG1
|
B:THR81
|
4.3
|
32.6
|
1.0
|
H
|
B:THR81
|
4.4
|
31.0
|
1.0
|
HB2
|
B:ALA86
|
4.4
|
28.4
|
1.0
|
H
|
B:ALA86
|
4.5
|
36.8
|
1.0
|
C
|
B:SER53
|
4.6
|
25.9
|
1.0
|
CA
|
B:CYS51
|
4.6
|
27.5
|
1.0
|
HB3
|
B:SER53
|
4.7
|
29.6
|
1.0
|
HB1
|
B:ALA86
|
4.7
|
28.4
|
1.0
|
H
|
B:GLN55
|
4.7
|
36.5
|
1.0
|
H
|
B:LEU56
|
4.8
|
34.9
|
1.0
|
CA
|
B:CYS79
|
4.8
|
26.2
|
1.0
|
HG21
|
B:THR81
|
4.8
|
29.8
|
1.0
|
HA
|
B:CYS54
|
4.8
|
34.8
|
1.0
|
CA
|
B:SER53
|
4.8
|
23.8
|
1.0
|
CA
|
B:CYS84
|
4.8
|
27.5
|
1.0
|
N
|
B:SER53
|
4.8
|
26.0
|
1.0
|
C
|
B:CYS54
|
4.9
|
30.3
|
1.0
|
HA
|
B:CYS79
|
5.0
|
31.5
|
1.0
|
C
|
B:CYS51
|
5.0
|
28.9
|
1.0
|
|
Reference:
M.A.Outram,
J.Chen,
S.Broderick,
Z.Li,
S.Aditya,
N.Tasneem,
T.Arndell,
C.Blundell,
D.J.Ericsson,
M.Figueroa,
J.Sperschneider,
P.N.Dodds,
S.J.Williams.
AVRSR27 Is A Zinc-Bound Effector with A Modular Structure Important For Immune Recognition. New Phytol. 2024.
ISSN: ESSN 1469-8137
PubMed: 38730532
DOI: 10.1111/NPH.19801
Page generated: Thu Oct 31 12:35:52 2024
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