Zinc in PDB 8uot: Composite Map of Picdeltatfiik FORM1

All present enzymatic activity of Composite Map of Picdeltatfiik FORM1:
2.7.7.6; 3.6.4.12; 5.6.2.3;

The structure of Composite Map of Picdeltatfiik FORM1 also contains other interesting chemical elements:

Magnesium	(Mg)	2 atoms
Iron	(Fe)	4 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 15;

Binding sites:

The binding sites of Zinc atom in the Composite Map of Picdeltatfiik FORM1 (pdb code 8uot). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 15 binding sites of Zinc where determined in the Composite Map of Picdeltatfiik FORM1, PDB code: 8uot:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 15 in the Composite Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Composite Map of Picdeltatfiik FORM1 within 5.0Å range: probe atom residue distance (Å) B Occ 4:Zn401 b:302.0 occ:1.00 CB 4:CYS292 2.2 224.1 1.0 SG 4:CYS305 2.3 200.3 1.0 SG 4:CYS292 2.3 224.1 1.0 SG 4:CYS289 2.3 241.5 1.0 SG 4:CYS308 2.3 219.6 1.0 CB 4:CYS289 2.8 241.5 1.0 N 4:CYS292 2.9 224.1 1.0 CA 4:CYS292 3.1 224.1 1.0 CB 4:CYS305 3.4 200.3 1.0 CB 4:CYS308 3.8 219.6 1.0 N 4:CYS308 3.9 219.6 1.0 C 4:CYS292 4.1 224.1 1.0 C 4:VAL291 4.1 231.6 1.0 N 4:LEU293 4.2 207.2 1.0 CA 4:CYS289 4.3 241.5 1.0 CB 4:ALA307 4.4 188.9 1.0 CA 4:CYS308 4.4 219.6 1.0 OG 4:SER310 4.4 201.3 1.0 CB 4:VAL291 4.5 231.6 1.0 N 4:VAL291 4.6 231.6 1.0 CA 4:VAL291 4.7 231.6 1.0 CA 4:CYS305 4.7 200.3 1.0 C 4:ALA307 4.8 188.9 1.0 C 4:CYS308 4.9 219.6 1.0 CZ 4:PHE312 4.9 203.0 1.0 N 4:ALA307 4.9 188.9 1.0 CA 4:ALA307 4.9 188.9 1.0 C 4:CYS289 5.0 241.5 1.0 CB 4:SER310 5.0 201.3 1.0

Zinc binding site 2 out of 15 in the Composite Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Composite Map of Picdeltatfiik FORM1 within 5.0Å range: probe atom residue distance (Å) B Occ 6:Zn501 b:318.3 occ:1.00 SG 6:CYS366 2.3 179.2 1.0 SG 6:CYS352 2.3 171.9 1.0 SG 6:CYS349 2.3 150.1 1.0 SG 6:CYS363 2.3 157.4 1.0 CB 6:CYS366 2.8 179.2 1.0 N 6:CYS366 3.0 179.2 1.0 CB 6:CYS349 3.3 150.1 1.0 CB 6:CYS363 3.5 157.4 1.0 CA 6:CYS366 3.5 179.2 1.0 CB 6:CYS352 3.6 171.9 1.0 OG 6:SER354 3.6 155.1 1.0 N 6:CYS352 3.7 171.9 1.0 CA 6:CYS352 4.1 171.9 1.0 C 6:CYS365 4.2 174.2 1.0 CB 6:CYS365 4.4 174.2 1.0 C 6:CYS366 4.4 179.2 1.0 N 6:ASP367 4.5 166.2 1.0 C 6:CYS352 4.5 171.9 1.0 CB 6:ASN351 4.6 151.8 1.0 CA 6:CYS349 4.6 150.1 1.0 CA 6:CYS365 4.6 174.2 1.0 N 6:HIS353 4.7 132.2 1.0 N 6:CYS365 4.7 174.2 1.0 C 6:ASN351 4.8 151.8 1.0 OD1 6:ASN351 4.8 151.8 1.0 CA 6:CYS363 4.8 157.4 1.0 N 6:ASN351 4.9 151.8 1.0 CB 6:SER354 4.9 155.1 1.0 CA 6:ASN351 5.0 151.8 1.0

Zinc binding site 3 out of 15 in the Composite Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Composite Map of Picdeltatfiik FORM1 within 5.0Å range: probe atom residue distance (Å) B Occ 6:Zn502 b:248.6 occ:1.00 SG 6:CYS440 2.3 185.6 1.0 SG 6:CYS406 2.3 156.9 1.0 SG 6:CYS437 2.3 171.9 1.0 SG 6:CYS403 2.3 216.9 1.0 CB 6:CYS406 2.8 156.9 1.0 CB 6:CYS437 3.1 171.9 1.0 CB 6:CYS440 3.2 185.6 1.0 CB 6:CYS403 3.3 216.9 1.0 N 6:CYS406 3.4 156.9 1.0 CA 6:CYS406 3.7 156.9 1.0 OG 6:SER405 3.7 149.5 1.0 N 6:CYS437 3.7 171.9 1.0 CA 6:CYS437 4.0 171.9 1.0 N 6:CYS440 4.0 185.6 1.0 CA 6:CYS440 4.2 185.6 1.0 C 6:CYS406 4.5 156.9 1.0 C 6:CYS437 4.6 171.9 1.0 C 6:SER405 4.6 149.5 1.0 N 6:GLN407 4.7 161.8 1.0 O 6:CYS437 4.7 171.9 1.0 CA 6:CYS403 4.7 216.9 1.0 CB 6:SER405 4.8 149.5 1.0 N 6:SER405 4.9 149.5 1.0 C 6:PHE436 4.9 164.2 1.0

Zinc binding site 4 out of 15 in the Composite Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Composite Map of Picdeltatfiik FORM1 within 5.0Å range: probe atom residue distance (Å) B Occ 6:Zn503 b:332.7 occ:1.00 SG 6:CYS451 2.3 210.9 1.0 SG 6:CYS429 2.3 201.7 1.0 SG 6:CYS432 2.3 195.8 1.0 SG 6:CYS454 2.3 210.9 1.0 CB 6:CYS432 2.4 195.8 1.0 CB 6:CYS429 3.1 201.7 1.0 N 6:CYS432 3.2 195.8 1.0 CA 6:CYS432 3.4 195.8 1.0 CB 6:CYS451 3.4 210.9 1.0 N 6:CYS454 3.5 210.9 1.0 CB 6:CYS454 3.6 210.9 1.0 C 6:ASP431 4.0 216.4 1.0 CA 6:CYS454 4.0 210.9 1.0 C 6:GLY453 4.2 197.0 1.0 O 6:CYS429 4.3 201.7 1.0 CB 6:ASP431 4.4 216.4 1.0 C 6:CYS432 4.4 195.8 1.0 CA 6:CYS429 4.5 201.7 1.0 CA 6:GLY453 4.5 197.0 1.0 CA 6:ASP431 4.6 216.4 1.0 O 6:ASP431 4.6 216.4 1.0 C 6:CYS429 4.7 201.7 1.0 CA 6:CYS451 4.7 210.9 1.0 N 6:ASP431 4.8 216.4 1.0 O 6:CYS451 4.8 210.9 1.0 N 6:GLY453 4.8 197.0 1.0 CZ 6:PHE389 4.9 178.6 1.0 CE2 6:PHE436 4.9 164.2 1.0 C 6:CYS451 4.9 210.9 1.0 CZ 6:PHE436 5.0 164.2 1.0 N 6:LYS433 5.0 164.9 1.0

Zinc binding site 5 out of 15 in the Composite Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Composite Map of Picdeltatfiik FORM1 within 5.0Å range: probe atom residue distance (Å) B Occ 6:Zn504 b:276.1 occ:1.00 ND1 6:HIS339 2.0 200.6 1.0 SG 6:CYS357 2.3 148.0 1.0 SG 6:CYS338 2.3 188.0 1.0 SG 6:CYS336 2.3 181.8 1.0 CB 6:CYS336 2.7 181.8 1.0 CE1 6:HIS339 3.0 200.6 1.0 CG 6:HIS339 3.0 200.6 1.0 N 6:HIS339 3.2 200.6 1.0 CB 6:CYS357 3.3 148.0 1.0 CB 6:HIS339 3.4 200.6 1.0 CA 6:HIS339 3.8 200.6 1.0 CB 6:CYS338 3.9 188.0 1.0 NE2 6:HIS339 4.1 200.6 1.0 CD2 6:HIS339 4.1 200.6 1.0 CA 6:CYS336 4.1 181.8 1.0 N 6:CYS338 4.2 188.0 1.0 C 6:CYS338 4.2 188.0 1.0 CA 6:CYS338 4.3 188.0 1.0 N 6:CYS357 4.5 148.0 1.0 CA 6:CYS357 4.5 148.0 1.0 C 6:HIS339 4.5 200.6 1.0 C 6:CYS336 4.5 181.8 1.0 N 6:SER340 4.5 170.9 1.0 CG2 6:VAL343 4.7 178.2 1.0 N 6:SER337 4.8 175.8 1.0 CG 6:LYS341 4.8 165.6 1.0 C 6:VAL356 4.9 120.5 1.0

Zinc binding site 6 out of 15 in the Composite Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Composite Map of Picdeltatfiik FORM1 within 5.0Å range: probe atom residue distance (Å) B Occ M:Zn401 b:347.1 occ:1.00 CB M:CYS48 2.3 122.6 1.0 SG M:CYS24 2.3 131.9 1.0 SG M:CYS45 2.3 134.7 1.0 SG M:CYS48 2.3 122.6 1.0 SG M:CYS27 2.3 141.8 1.0 CB M:CYS45 2.8 134.7 1.0 CB M:CYS24 3.1 131.9 1.0 CB M:CYS27 3.3 141.8 1.0 CA M:CYS48 3.5 122.6 1.0 N M:CYS48 3.6 122.6 1.0 CA M:CYS45 4.2 134.7 1.0 N M:CYS27 4.2 141.8 1.0 O M:CYS45 4.3 134.7 1.0 CA M:CYS27 4.4 141.8 1.0 C M:CYS48 4.5 122.6 1.0 CA M:CYS24 4.5 131.9 1.0 C M:CYS45 4.5 134.7 1.0 N M:GLY49 4.7 114.8 1.0 C M:LEU47 4.7 97.0 1.0 C M:GLU26 4.9 107.3 1.0

Zinc binding site 7 out of 15 in the Composite Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Composite Map of Picdeltatfiik FORM1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1801 b:273.2 occ:0.55 SG A:CYS107 2.3 111.4 1.0 SG A:CYS110 2.3 110.4 1.0 SG A:CYS167 2.3 110.8 1.0 SG A:CYS148 2.3 143.7 1.0 CB A:CYS148 2.7 143.7 1.0 CB A:CYS110 2.9 110.4 1.0 CB A:CYS107 3.0 111.4 1.0 NZ A:LYS112 3.2 104.3 1.0 O A:MET108 3.8 100.8 1.0 O A:CYS167 3.9 110.8 1.0 CB A:CYS167 3.9 110.8 1.0 CA A:CYS110 4.1 110.4 1.0 N A:CYS110 4.2 110.4 1.0 CA A:CYS148 4.2 143.7 1.0 CA A:CYS107 4.3 111.4 1.0 C A:CYS167 4.4 110.8 1.0 N A:CYS167 4.4 110.8 1.0 CA A:CYS167 4.4 110.8 1.0 C A:CYS107 4.5 111.4 1.0 O A:CYS107 4.6 111.4 1.0 CE A:LYS112 4.6 104.3 1.0 NE2 A:GLN171 4.8 124.1 1.0 C A:CYS148 4.9 143.7 1.0 C A:MET108 4.9 100.8 1.0 CB A:ASN169 5.0 117.5 1.0 CG A:LYS112 5.0 104.3 1.0 C A:CYS110 5.0 110.4 1.0

Zinc binding site 8 out of 15 in the Composite Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Composite Map of Picdeltatfiik FORM1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1802 b:159.9 occ:1.00 CB A:CYS67 1.7 77.4 1.0 NE2 A:HIS80 2.0 39.9 1.0 SG A:CYS67 2.3 77.4 1.0 SG A:CYS70 2.3 91.0 1.0 SG A:CYS77 2.3 45.5 1.0 O A:CYS67 2.3 77.4 1.0 CE1 A:HIS80 2.7 39.9 1.0 CA A:CYS67 2.7 77.4 1.0 C A:CYS67 2.9 77.4 1.0 CD2 A:HIS80 3.2 39.9 1.0 OE1 A:GLU72 3.4 73.1 1.0 NE2 A:GLN68 3.5 74.8 1.0 CB A:CYS77 3.5 45.5 1.0 CB A:CYS70 3.7 91.0 1.0 ND1 A:HIS80 3.9 39.9 1.0 N A:CYS67 3.9 77.4 1.0 N A:GLN68 4.2 74.8 1.0 CG A:HIS80 4.2 39.9 1.0 N A:CYS70 4.2 91.0 1.0 O A:LYS66 4.2 62.0 1.0 CA A:CYS70 4.2 91.0 1.0 C A:CYS70 4.3 91.0 1.0 CD A:GLN68 4.4 74.8 1.0 N A:GLN71 4.5 73.7 1.0 C A:LYS66 4.5 62.0 1.0 CD A:GLU72 4.6 73.1 1.0 CA A:CYS77 4.6 45.5 1.0 CG A:GLN68 4.7 74.8 1.0 N A:GLU72 4.8 73.1 1.0 O A:CYS70 4.8 91.0 1.0

Zinc binding site 9 out of 15 in the Composite Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Composite Map of Picdeltatfiik FORM1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1301 b:175.4 occ:1.00 SG B:CYS1166 2.3 48.2 1.0 SG B:CYS1163 2.3 52.0 1.0 SG B:CYS1182 2.3 94.9 1.0 CB B:CYS1185 2.7 81.0 1.0 CB B:CYS1166 2.8 48.2 1.0 CB B:CYS1163 2.9 52.0 1.0 SG B:CYS1185 3.6 81.0 1.0 N B:CYS1166 3.6 48.2 1.0 CB B:CYS1182 3.8 94.9 1.0 CA B:CYS1166 3.8 48.2 1.0 CA B:CYS1185 3.9 81.0 1.0 NZ D:LYS16 3.9 179.4 1.0 N B:CYS1185 4.0 81.0 1.0 CA B:CYS1163 4.3 52.0 1.0 OG1 B:THR1170 4.4 33.1 1.0 O B:CYS1182 4.6 94.9 1.0 O B:LYS1183 4.8 70.6 1.0 OD1 B:ASN1187 4.8 49.0 1.0 C B:ILE1165 4.9 54.8 1.0 CA B:CYS1182 4.9 94.9 1.0 C B:CYS1182 4.9 94.9 1.0 C B:CYS1166 4.9 48.2 1.0 CE D:LYS16 5.0 179.4 1.0

Zinc binding site 10 out of 15 in the Composite Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Composite Map of Picdeltatfiik FORM1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn401 b:322.1 occ:1.00 SG C:CYS92 2.3 124.6 1.0 SG C:CYS88 2.3 190.2 1.0 SG C:CYS86 2.3 174.5 1.0 SG C:CYS95 2.3 106.8 1.0 CB C:CYS95 2.6 106.8 1.0 CB C:CYS86 3.2 174.5 1.0 CB C:CYS88 3.4 190.2 1.0 CB C:CYS92 3.5 124.6 1.0 N C:CYS92 3.6 124.6 1.0 N C:CYS95 3.7 106.8 1.0 CA C:CYS95 3.7 106.8 1.0 CA C:CYS92 4.0 124.6 1.0 O C:CYS92 4.2 124.6 1.0 C C:LYS94 4.2 100.0 1.0 N C:CYS88 4.4 190.2 1.0 C C:CYS92 4.4 124.6 1.0 CA C:CYS88 4.4 190.2 1.0 O C:LYS94 4.6 100.0 1.0 CA C:CYS86 4.6 174.5 1.0 C C:HIS91 4.7 138.1 1.0 C C:CYS95 4.7 106.8 1.0 CA C:HIS91 4.9 138.1 1.0 C C:CYS88 4.9 190.2 1.0

C.Yang, P.Basnet, S.Sharmin, H.Shen, C.D.Kaplan, K.Murakami. Transcription Start Site Scanning Requires the Fungi-Specific Hydrophobic Loop of TFB3. Nucleic Acids Res. 2024.
ISSN: ESSN 1362-4962
PubMed: 39287137
DOI: 10.1093/NAR/GKAE805