Zinc in PDB 8umi: Consensus Map of Picdeltatfiik FORM1

Enzymatic activity of Consensus Map of Picdeltatfiik FORM1

All present enzymatic activity of Consensus Map of Picdeltatfiik FORM1:
2.7.7.6; 3.6.4.12;

Other elements in 8umi:

The structure of Consensus Map of Picdeltatfiik FORM1 also contains other interesting chemical elements:

Iron (Fe) 4 atoms
Magnesium (Mg) 2 atoms

Zinc Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 15;

Binding sites:

The binding sites of Zinc atom in the Consensus Map of Picdeltatfiik FORM1 (pdb code 8umi). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 15 binding sites of Zinc where determined in the Consensus Map of Picdeltatfiik FORM1, PDB code: 8umi:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 15 in 8umi

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Zinc binding site 1 out of 15 in the Consensus Map of Picdeltatfiik FORM1


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Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Consensus Map of Picdeltatfiik FORM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
4:Zn401

b:302.0
occ:1.00
CB 4:CYS292 2.2 224.1 1.0
SG 4:CYS305 2.3 200.3 1.0
SG 4:CYS292 2.3 224.1 1.0
SG 4:CYS308 2.3 219.6 1.0
SG 4:CYS289 2.3 241.5 1.0
CB 4:CYS289 2.8 241.5 1.0
N 4:CYS292 2.9 224.1 1.0
CA 4:CYS292 3.1 224.1 1.0
CB 4:CYS305 3.4 200.3 1.0
CB 4:CYS308 3.8 219.6 1.0
N 4:CYS308 3.9 219.6 1.0
C 4:CYS292 4.1 224.1 1.0
C 4:VAL291 4.1 231.6 1.0
N 4:LEU293 4.2 207.2 1.0
CA 4:CYS289 4.3 241.5 1.0
CB 4:ALA307 4.4 188.9 1.0
CA 4:CYS308 4.4 219.6 1.0
OG 4:SER310 4.4 201.3 1.0
CB 4:VAL291 4.5 231.6 1.0
CA 4:VAL291 4.7 231.6 1.0
N 4:VAL291 4.7 231.6 1.0
CA 4:CYS305 4.7 200.3 1.0
C 4:ALA307 4.8 188.9 1.0
C 4:CYS308 4.9 219.6 1.0
CZ 4:PHE312 4.9 203.0 1.0
N 4:ALA307 4.9 188.9 1.0
CA 4:ALA307 4.9 188.9 1.0
C 4:CYS289 5.0 241.5 1.0
CB 4:SER310 5.0 201.3 1.0

Zinc binding site 2 out of 15 in 8umi

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Zinc binding site 2 out of 15 in the Consensus Map of Picdeltatfiik FORM1


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Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Consensus Map of Picdeltatfiik FORM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
6:Zn501

b:318.3
occ:1.00
SG 6:CYS366 2.3 179.2 1.0
SG 6:CYS352 2.3 171.9 1.0
SG 6:CYS349 2.3 150.1 1.0
SG 6:CYS363 2.3 157.4 1.0
CB 6:CYS366 2.8 179.2 1.0
N 6:CYS366 3.0 179.2 1.0
CB 6:CYS349 3.3 150.1 1.0
CB 6:CYS363 3.5 157.4 1.0
CA 6:CYS366 3.5 179.2 1.0
CB 6:CYS352 3.6 171.9 1.0
OG 6:SER354 3.6 155.1 1.0
N 6:CYS352 3.7 171.9 1.0
CA 6:CYS352 4.1 171.9 1.0
C 6:CYS365 4.2 174.2 1.0
CB 6:CYS365 4.4 174.2 1.0
C 6:CYS366 4.4 179.2 1.0
N 6:ASP367 4.5 166.2 1.0
C 6:CYS352 4.5 171.9 1.0
CB 6:ASN351 4.6 151.8 1.0
CA 6:CYS349 4.6 150.1 1.0
CA 6:CYS365 4.6 174.2 1.0
N 6:HIS353 4.7 132.2 1.0
N 6:CYS365 4.7 174.2 1.0
C 6:ASN351 4.8 151.8 1.0
OD1 6:ASN351 4.8 151.8 1.0
CA 6:CYS363 4.8 157.4 1.0
N 6:ASN351 4.9 151.8 1.0
CB 6:SER354 4.9 155.1 1.0
CA 6:ASN351 5.0 151.8 1.0

Zinc binding site 3 out of 15 in 8umi

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Zinc binding site 3 out of 15 in the Consensus Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Consensus Map of Picdeltatfiik FORM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
6:Zn502

b:248.6
occ:1.00
SG 6:CYS440 2.3 185.6 1.0
SG 6:CYS406 2.3 156.9 1.0
SG 6:CYS437 2.3 171.9 1.0
SG 6:CYS403 2.3 216.9 1.0
CB 6:CYS406 2.8 156.9 1.0
CB 6:CYS437 3.1 171.9 1.0
CB 6:CYS440 3.2 185.6 1.0
CB 6:CYS403 3.3 216.9 1.0
N 6:CYS406 3.4 156.9 1.0
CA 6:CYS406 3.7 156.9 1.0
OG 6:SER405 3.7 149.5 1.0
N 6:CYS437 3.7 171.9 1.0
CA 6:CYS437 4.0 171.9 1.0
N 6:CYS440 4.0 185.6 1.0
CA 6:CYS440 4.2 185.6 1.0
C 6:CYS406 4.5 156.9 1.0
C 6:CYS437 4.6 171.9 1.0
C 6:SER405 4.6 149.5 1.0
N 6:GLN407 4.7 161.8 1.0
CA 6:CYS403 4.7 216.9 1.0
O 6:CYS437 4.7 171.9 1.0
CB 6:SER405 4.8 149.5 1.0
N 6:SER405 4.9 149.5 1.0
C 6:PHE436 4.9 164.2 1.0

Zinc binding site 4 out of 15 in 8umi

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Zinc binding site 4 out of 15 in the Consensus Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Consensus Map of Picdeltatfiik FORM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
6:Zn503

b:332.7
occ:1.00
SG 6:CYS451 2.3 210.9 1.0
SG 6:CYS429 2.3 201.7 1.0
SG 6:CYS432 2.3 195.8 1.0
SG 6:CYS454 2.3 210.9 1.0
CB 6:CYS432 2.4 195.8 1.0
CB 6:CYS429 3.1 201.7 1.0
N 6:CYS432 3.2 195.8 1.0
CA 6:CYS432 3.4 195.8 1.0
CB 6:CYS451 3.4 210.9 1.0
N 6:CYS454 3.5 210.9 1.0
CB 6:CYS454 3.6 210.9 1.0
C 6:ASP431 4.0 216.4 1.0
CA 6:CYS454 4.0 210.9 1.0
C 6:GLY453 4.2 197.0 1.0
O 6:CYS429 4.3 201.7 1.0
CB 6:ASP431 4.4 216.4 1.0
C 6:CYS432 4.4 195.8 1.0
CA 6:CYS429 4.5 201.7 1.0
CA 6:GLY453 4.5 197.0 1.0
CA 6:ASP431 4.6 216.4 1.0
O 6:ASP431 4.6 216.4 1.0
C 6:CYS429 4.7 201.7 1.0
CA 6:CYS451 4.7 210.9 1.0
N 6:ASP431 4.8 216.4 1.0
O 6:CYS451 4.8 210.9 1.0
N 6:GLY453 4.8 197.0 1.0
CZ 6:PHE389 4.9 178.6 1.0
CE1 6:PHE436 4.9 164.2 1.0
C 6:CYS451 4.9 210.9 1.0
CZ 6:PHE436 5.0 164.2 1.0
N 6:LYS433 5.0 164.9 1.0

Zinc binding site 5 out of 15 in 8umi

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Zinc binding site 5 out of 15 in the Consensus Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Consensus Map of Picdeltatfiik FORM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
6:Zn504

b:276.1
occ:1.00
ND1 6:HIS339 2.0 200.6 1.0
SG 6:CYS357 2.3 148.0 1.0
SG 6:CYS338 2.3 188.0 1.0
SG 6:CYS336 2.3 181.8 1.0
CB 6:CYS336 2.7 181.8 1.0
CE1 6:HIS339 3.0 200.6 1.0
CG 6:HIS339 3.0 200.6 1.0
N 6:HIS339 3.2 200.6 1.0
CB 6:CYS357 3.3 148.0 1.0
CB 6:HIS339 3.4 200.6 1.0
CA 6:HIS339 3.8 200.6 1.0
CB 6:CYS338 3.9 188.0 1.0
NE2 6:HIS339 4.1 200.6 1.0
CD2 6:HIS339 4.1 200.6 1.0
CA 6:CYS336 4.1 181.8 1.0
N 6:CYS338 4.2 188.0 1.0
C 6:CYS338 4.2 188.0 1.0
CA 6:CYS338 4.3 188.0 1.0
CA 6:CYS357 4.5 148.0 1.0
N 6:CYS357 4.5 148.0 1.0
C 6:HIS339 4.5 200.6 1.0
C 6:CYS336 4.5 181.8 1.0
N 6:SER340 4.5 170.9 1.0
CG2 6:VAL343 4.7 178.2 1.0
N 6:SER337 4.8 175.8 1.0
CG 6:LYS341 4.8 165.6 1.0
C 6:VAL356 4.9 120.5 1.0
N 6:CYS336 5.0 181.8 1.0

Zinc binding site 6 out of 15 in 8umi

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Zinc binding site 6 out of 15 in the Consensus Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Consensus Map of Picdeltatfiik FORM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Zn401

b:347.1
occ:1.00
CB M:CYS48 2.3 122.6 1.0
SG M:CYS45 2.3 134.7 1.0
SG M:CYS24 2.3 131.9 1.0
SG M:CYS27 2.3 141.8 1.0
SG M:CYS48 2.3 122.6 1.0
CB M:CYS45 2.8 134.7 1.0
CB M:CYS24 3.1 131.9 1.0
CB M:CYS27 3.3 141.8 1.0
CA M:CYS48 3.5 122.6 1.0
N M:CYS48 3.6 122.6 1.0
CA M:CYS45 4.2 134.7 1.0
N M:CYS27 4.2 141.8 1.0
O M:CYS45 4.3 134.7 1.0
CA M:CYS27 4.4 141.8 1.0
C M:CYS48 4.5 122.6 1.0
CA M:CYS24 4.5 131.9 1.0
C M:CYS45 4.5 134.7 1.0
N M:GLY49 4.7 114.8 1.0
C M:LEU47 4.7 97.0 1.0
C M:GLU26 4.9 107.3 1.0

Zinc binding site 7 out of 15 in 8umi

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Zinc binding site 7 out of 15 in the Consensus Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Consensus Map of Picdeltatfiik FORM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1801

b:273.2
occ:0.95
SG A:CYS107 2.3 111.4 1.0
SG A:CYS110 2.3 110.4 1.0
SG A:CYS148 2.3 143.7 1.0
SG A:CYS167 2.3 110.8 1.0
CB A:CYS148 2.7 143.7 1.0
CB A:CYS110 2.9 110.4 1.0
CB A:CYS107 3.0 111.4 1.0
NZ A:LYS112 3.2 104.3 1.0
O A:MET108 3.8 100.8 1.0
O A:CYS167 3.9 110.8 1.0
CB A:CYS167 3.9 110.8 1.0
CA A:CYS110 4.1 110.4 1.0
N A:CYS110 4.2 110.4 1.0
CA A:CYS148 4.2 143.7 1.0
CA A:CYS107 4.3 111.4 1.0
C A:CYS167 4.4 110.8 1.0
N A:CYS167 4.4 110.8 1.0
CA A:CYS167 4.5 110.8 1.0
C A:CYS107 4.5 111.4 1.0
O A:CYS107 4.5 111.4 1.0
CE A:LYS112 4.6 104.3 1.0
NE2 A:GLN171 4.8 124.1 1.0
C A:CYS148 4.9 143.7 1.0
C A:MET108 4.9 100.8 1.0
CB A:ASN169 5.0 117.5 1.0
CG A:LYS112 5.0 104.3 1.0
C A:CYS110 5.0 110.4 1.0

Zinc binding site 8 out of 15 in 8umi

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Zinc binding site 8 out of 15 in the Consensus Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Consensus Map of Picdeltatfiik FORM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1802

b:159.9
occ:1.00
CB A:CYS67 1.7 77.4 1.0
NE2 A:HIS80 2.0 39.9 1.0
SG A:CYS67 2.3 77.4 1.0
SG A:CYS70 2.3 91.0 1.0
SG A:CYS77 2.3 45.5 1.0
O A:CYS67 2.3 77.4 1.0
CE1 A:HIS80 2.7 39.9 1.0
CA A:CYS67 2.7 77.4 1.0
C A:CYS67 2.9 77.4 1.0
CD2 A:HIS80 3.2 39.9 1.0
OE1 A:GLU72 3.4 73.1 1.0
NE2 A:GLN68 3.5 74.8 1.0
CB A:CYS77 3.5 45.5 1.0
CB A:CYS70 3.7 91.0 1.0
ND1 A:HIS80 3.9 39.9 1.0
N A:CYS67 3.9 77.4 1.0
N A:GLN68 4.2 74.8 1.0
N A:CYS70 4.2 91.0 1.0
CG A:HIS80 4.2 39.9 1.0
O A:LYS66 4.2 62.0 1.0
CA A:CYS70 4.2 91.0 1.0
C A:CYS70 4.3 91.0 1.0
CD A:GLN68 4.4 74.8 1.0
N A:GLN71 4.5 73.7 1.0
C A:LYS66 4.5 62.0 1.0
CD A:GLU72 4.6 73.1 1.0
CA A:CYS77 4.6 45.5 1.0
CG A:GLN68 4.7 74.8 1.0
N A:GLU72 4.8 73.1 1.0
O A:CYS70 4.8 91.0 1.0

Zinc binding site 9 out of 15 in 8umi

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Zinc binding site 9 out of 15 in the Consensus Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Consensus Map of Picdeltatfiik FORM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1301

b:175.4
occ:1.00
SG B:CYS1166 2.3 48.2 1.0
SG B:CYS1163 2.3 52.0 1.0
SG B:CYS1182 2.3 94.9 1.0
CB B:CYS1185 2.7 81.0 1.0
CB B:CYS1166 2.8 48.2 1.0
CB B:CYS1163 2.9 52.0 1.0
SG B:CYS1185 3.6 81.0 1.0
N B:CYS1166 3.6 48.2 1.0
CB B:CYS1182 3.8 94.9 1.0
CA B:CYS1166 3.8 48.2 1.0
CA B:CYS1185 3.9 81.0 1.0
NZ D:LYS16 3.9 179.4 1.0
N B:CYS1185 4.0 81.0 1.0
CA B:CYS1163 4.3 52.0 1.0
OG1 B:THR1170 4.4 33.1 1.0
O B:CYS1182 4.6 94.9 1.0
O B:LYS1183 4.8 70.6 1.0
OD1 B:ASN1187 4.8 49.0 1.0
C B:ILE1165 4.9 54.8 1.0
CA B:CYS1182 4.9 94.9 1.0
C B:CYS1182 4.9 94.9 1.0
C B:CYS1166 4.9 48.2 1.0
CE D:LYS16 4.9 179.4 1.0

Zinc binding site 10 out of 15 in 8umi

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Zinc binding site 10 out of 15 in the Consensus Map of Picdeltatfiik FORM1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Consensus Map of Picdeltatfiik FORM1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn401

b:322.1
occ:1.00
SG C:CYS92 2.3 124.6 1.0
SG C:CYS88 2.3 190.2 1.0
SG C:CYS95 2.3 106.8 1.0
SG C:CYS86 2.3 174.5 1.0
CB C:CYS95 2.6 106.8 1.0
CB C:CYS86 3.2 174.5 1.0
CB C:CYS88 3.4 190.2 1.0
CB C:CYS92 3.5 124.6 1.0
N C:CYS92 3.6 124.6 1.0
N C:CYS95 3.7 106.8 1.0
CA C:CYS95 3.7 106.8 1.0
CA C:CYS92 4.0 124.6 1.0
O C:CYS92 4.2 124.6 1.0
C C:LYS94 4.3 100.0 1.0
N C:CYS88 4.4 190.2 1.0
C C:CYS92 4.4 124.6 1.0
CA C:CYS88 4.4 190.2 1.0
O C:LYS94 4.5 100.0 1.0
CA C:CYS86 4.6 174.5 1.0
C C:HIS91 4.7 138.1 1.0
C C:CYS95 4.7 106.8 1.0
CA C:HIS91 4.9 138.1 1.0
C C:CYS88 4.9 190.2 1.0

Reference:

C.Yang, K.Murakami. Consensus Map of Picdeltatfiik FORM1 To Be Published.
Page generated: Wed Nov 13 13:43:48 2024

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