Zinc in PDB 8umh: Consensus Map of Picdeltatfiik FORM2

Enzymatic activity of Consensus Map of Picdeltatfiik FORM2

All present enzymatic activity of Consensus Map of Picdeltatfiik FORM2:
2.7.7.6; 3.6.4.12;

Other elements in 8umh:

The structure of Consensus Map of Picdeltatfiik FORM2 also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Iron (Fe) 4 atoms

Zinc Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 15;

Binding sites:

The binding sites of Zinc atom in the Consensus Map of Picdeltatfiik FORM2 (pdb code 8umh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 15 binding sites of Zinc where determined in the Consensus Map of Picdeltatfiik FORM2, PDB code: 8umh:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 15 in 8umh

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Zinc binding site 1 out of 15 in the Consensus Map of Picdeltatfiik FORM2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Consensus Map of Picdeltatfiik FORM2 within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Zn401

b:291.8
occ:1.00
SG M:CYS48 2.3 125.3 1.0
SG M:CYS45 2.3 147.1 1.0
SG M:CYS24 2.3 131.7 1.0
SG M:CYS27 2.3 140.1 1.0
CB M:CYS48 2.8 125.3 1.0
CB M:CYS45 3.0 147.1 1.0
CB M:CYS24 3.2 131.7 1.0
CB M:CYS27 3.3 140.1 1.0
N M:CYS48 3.5 125.3 1.0
CA M:CYS48 3.8 125.3 1.0
N M:CYS27 4.2 140.1 1.0
CA M:CYS27 4.3 140.1 1.0
CA M:CYS45 4.4 147.1 1.0
O M:CYS45 4.5 147.1 1.0
CA M:CYS24 4.6 131.7 1.0
C M:CYS45 4.6 147.1 1.0
C M:LEU47 4.7 148.2 1.0
C M:GLU26 4.7 93.0 1.0
CB M:LEU47 4.7 148.2 1.0
C M:CYS48 4.8 125.3 1.0
N M:GLY49 4.9 87.2 1.0

Zinc binding site 2 out of 15 in 8umh

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Zinc binding site 2 out of 15 in the Consensus Map of Picdeltatfiik FORM2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Consensus Map of Picdeltatfiik FORM2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1801

b:299.6
occ:0.95
SG A:CYS148 2.3 133.1 1.0
SG A:CYS107 2.3 115.3 1.0
SG A:CYS110 2.3 80.0 1.0
SG A:CYS167 2.3 98.1 1.0
CB A:CYS110 2.5 80.0 1.0
CB A:CYS107 2.7 115.3 1.0
CB A:CYS148 2.7 133.1 1.0
O A:MET108 3.8 94.2 1.0
CA A:CYS110 3.9 80.0 1.0
CB A:CYS167 3.9 98.1 1.0
CA A:CYS107 4.0 115.3 1.0
N A:CYS110 4.1 80.0 1.0
O A:CYS167 4.1 98.1 1.0
CA A:CYS148 4.2 133.1 1.0
C A:CYS107 4.3 115.3 1.0
N A:CYS167 4.4 98.1 1.0
O A:CYS107 4.4 115.3 1.0
CA A:CYS167 4.5 98.1 1.0
C A:CYS167 4.6 98.1 1.0
C A:CYS110 4.7 80.0 1.0
C A:CYS148 4.8 133.1 1.0
NE2 A:GLN171 4.8 118.1 1.0
O A:ASN169 4.9 108.6 1.0
C A:MET108 4.9 94.2 1.0
C A:HIS109 5.0 87.7 1.0

Zinc binding site 3 out of 15 in 8umh

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Zinc binding site 3 out of 15 in the Consensus Map of Picdeltatfiik FORM2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Consensus Map of Picdeltatfiik FORM2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1802

b:63.5
occ:1.00
CB A:CYS67 1.7 62.9 1.0
NE2 A:HIS80 2.1 32.4 1.0
SG A:CYS70 2.3 74.1 1.0
O A:CYS67 2.3 62.9 1.0
SG A:CYS67 2.3 62.9 1.0
SG A:CYS77 2.3 43.6 1.0
CA A:CYS67 2.7 62.9 1.0
C A:CYS67 2.8 62.9 1.0
CD2 A:HIS80 3.0 32.4 1.0
CE1 A:HIS80 3.1 32.4 1.0
CB A:CYS77 3.4 43.6 1.0
CB A:CYS70 3.8 74.1 1.0
N A:CYS67 3.9 62.9 1.0
N A:GLN68 4.1 60.5 1.0
N A:CYS70 4.1 74.1 1.0
CG A:HIS80 4.1 32.4 1.0
ND1 A:HIS80 4.2 32.4 1.0
O A:LYS66 4.2 54.9 1.0
CA A:CYS70 4.3 74.1 1.0
CA A:CYS77 4.5 43.6 1.0
C A:LYS66 4.5 54.9 1.0
C A:CYS70 4.5 74.1 1.0
CB A:GLU72 4.5 66.9 1.0
N A:GLU72 4.6 66.9 1.0
N A:GLN71 4.6 63.6 1.0
CG A:GLN68 4.7 60.5 1.0
CA A:GLY59 4.8 47.5 1.0
OE1 A:GLN68 4.9 60.5 1.0
CG A:GLU72 5.0 66.9 1.0

Zinc binding site 4 out of 15 in 8umh

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Zinc binding site 4 out of 15 in the Consensus Map of Picdeltatfiik FORM2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Consensus Map of Picdeltatfiik FORM2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1301

b:268.2
occ:1.00
CB B:CYS1185 2.1 109.0 1.0
SG B:CYS1166 2.3 86.0 1.0
SG B:CYS1185 2.3 109.0 1.0
SG B:CYS1163 2.3 98.4 1.0
SG B:CYS1182 2.3 80.5 1.0
CB B:CYS1163 3.2 98.4 1.0
CB B:CYS1166 3.3 86.0 1.0
OD1 B:ASN1187 3.4 99.9 1.0
N B:CYS1166 3.5 86.0 1.0
CA B:CYS1185 3.7 109.0 1.0
ND2 B:ASN1187 3.8 99.9 1.0
CB B:CYS1182 3.8 80.5 1.0
CG B:ASN1187 3.9 99.9 1.0
CA B:CYS1166 3.9 86.0 1.0
NZ D:LYS16 4.3 215.2 1.0
N B:CYS1185 4.4 109.0 1.0
C B:CYS1185 4.4 109.0 1.0
C B:ILE1165 4.5 86.7 1.0
O B:CYS1163 4.6 98.4 1.0
CA B:CYS1163 4.6 98.4 1.0
O B:CYS1185 4.6 109.0 1.0
CB B:ILE1165 4.7 86.7 1.0
C B:CYS1163 4.9 98.4 1.0
O B:CYS1182 4.9 80.5 1.0

Zinc binding site 5 out of 15 in 8umh

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Zinc binding site 5 out of 15 in the Consensus Map of Picdeltatfiik FORM2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Consensus Map of Picdeltatfiik FORM2 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn401

b:220.4
occ:1.00
SG C:CYS92 2.3 81.8 1.0
SG C:CYS88 2.3 212.6 1.0
SG C:CYS86 2.3 236.3 1.0
SG C:CYS95 2.3 76.3 1.0
CB C:CYS95 2.9 76.3 1.0
CB C:CYS86 3.4 236.3 1.0
CB C:CYS92 3.5 81.8 1.0
N C:CYS92 3.6 81.8 1.0
CB C:CYS88 3.7 212.6 1.0
N C:CYS95 4.0 76.3 1.0
CA C:CYS92 4.0 81.8 1.0
CA C:CYS95 4.0 76.3 1.0
O C:CYS92 4.4 81.8 1.0
C C:CYS92 4.5 81.8 1.0
N C:CYS88 4.6 212.6 1.0
CA C:CYS88 4.7 212.6 1.0
C C:HIS91 4.7 100.8 1.0
CA C:CYS86 4.8 236.3 1.0
CA C:HIS91 4.9 100.8 1.0
C C:LYS94 4.9 72.0 1.0
C C:CYS95 5.0 76.3 1.0

Zinc binding site 6 out of 15 in 8umh

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Zinc binding site 6 out of 15 in the Consensus Map of Picdeltatfiik FORM2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Consensus Map of Picdeltatfiik FORM2 within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn201

b:153.1
occ:1.00
SG I:CYS10 2.3 95.0 1.0
SG I:CYS32 2.3 109.5 1.0
SG I:CYS7 2.3 95.4 1.0
SG I:CYS29 2.3 115.0 1.0
CB I:CYS7 3.0 95.4 1.0
CB I:CYS29 3.1 115.0 1.0
CB I:CYS32 3.2 109.5 1.0
N I:CYS32 3.6 109.5 1.0
CA I:CYS32 3.9 109.5 1.0
CB I:CYS10 4.0 95.0 1.0
O I:CYS10 4.0 95.0 1.0
N I:CYS10 4.1 95.0 1.0
C I:CYS32 4.3 109.5 1.0
O I:CYS32 4.4 109.5 1.0
CB I:TYR34 4.4 75.7 1.0
CA I:CYS7 4.4 95.4 1.0
CA I:CYS10 4.5 95.0 1.0
CB I:THR31 4.5 114.9 1.0
ND2 I:ASN12 4.6 72.3 1.0
CA I:CYS29 4.6 115.0 1.0
CB I:ASP9 4.6 124.0 1.0
C I:CYS10 4.7 95.0 1.0
C I:THR31 4.7 114.9 1.0
N I:TYR34 4.7 75.7 1.0
CG2 I:THR31 4.7 114.9 1.0
C I:ASP9 4.9 124.0 1.0
C I:CYS7 5.0 95.4 1.0

Zinc binding site 7 out of 15 in 8umh

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Zinc binding site 7 out of 15 in the Consensus Map of Picdeltatfiik FORM2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Consensus Map of Picdeltatfiik FORM2 within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn202

b:183.3
occ:1.00
N I:CYS78 2.3 126.2 1.0
SG I:CYS106 2.3 104.4 1.0
SG I:CYS75 2.3 127.4 1.0
SG I:CYS78 2.3 126.2 1.0
CB I:CYS75 2.6 127.4 1.0
N I:LYS77 2.9 86.8 1.0
CB I:CYS106 2.9 104.4 1.0
CB I:CYS78 3.1 126.2 1.0
C I:LYS77 3.1 86.8 1.0
CA I:CYS78 3.2 126.2 1.0
O I:CYS75 3.2 127.4 1.0
CA I:LYS77 3.2 86.8 1.0
C I:CYS75 3.3 127.4 1.0
CB I:LYS77 3.3 86.8 1.0
CA I:CYS75 3.5 127.4 1.0
N I:HIS79 3.9 123.1 1.0
N I:PRO76 3.9 87.8 1.0
C I:CYS78 4.0 126.2 1.0
C I:PRO76 4.1 87.8 1.0
O I:LYS77 4.3 86.8 1.0
CA I:CYS106 4.3 104.4 1.0
CG I:LYS77 4.4 86.8 1.0
N I:CYS75 4.5 127.4 1.0
CA I:PRO76 4.5 87.8 1.0
N I:CYS106 4.6 104.4 1.0
OG I:SER105 4.7 109.8 1.0
CE I:LYS77 4.8 86.8 1.0
CD I:PRO76 4.9 87.8 1.0

Zinc binding site 8 out of 15 in 8umh

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Zinc binding site 8 out of 15 in the Consensus Map of Picdeltatfiik FORM2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Consensus Map of Picdeltatfiik FORM2 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn101

b:194.3
occ:1.00
SG J:CYS10 2.3 30.6 1.0
SG J:CYS46 2.3 57.5 1.0
SG J:CYS45 2.3 42.5 1.0
SG J:CYS7 2.3 21.1 1.0
N J:CYS46 2.6 57.5 1.0
CB J:CYS10 2.7 30.6 1.0
C J:CYS45 2.9 42.5 1.0
CA J:CYS46 3.0 57.5 1.0
N J:CYS10 3.1 30.6 1.0
O J:CYS45 3.1 42.5 1.0
CB J:CYS46 3.2 57.5 1.0
CB J:CYS7 3.3 21.1 1.0
CB J:CYS45 3.3 42.5 1.0
CA J:CYS10 3.4 30.6 1.0
CA J:CYS45 3.7 42.5 1.0
N J:GLY11 4.2 23.5 1.0
CB J:SER9 4.2 23.9 1.0
C J:SER9 4.3 23.9 1.0
C J:CYS10 4.4 30.6 1.0
C J:CYS46 4.5 57.5 1.0
N J:CYS45 4.6 42.5 1.0
CA J:SER9 4.7 23.9 1.0
CA J:CYS7 4.7 21.1 1.0
N J:SER9 4.9 23.9 1.0

Zinc binding site 9 out of 15 in 8umh

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Zinc binding site 9 out of 15 in the Consensus Map of Picdeltatfiik FORM2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Consensus Map of Picdeltatfiik FORM2 within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Zn201

b:212.9
occ:1.00
CB L:CYS51 2.3 236.0 1.0
SG L:CYS48 2.3 174.8 1.0
SG L:CYS31 2.3 118.6 1.0
SG L:CYS51 2.3 236.0 1.0
CB L:ALA32 2.6 119.3 1.0
CB L:CYS48 2.8 174.8 1.0
CA L:CYS51 3.7 236.0 1.0
CA L:ALA32 3.9 119.3 1.0
O L:ILE30 3.9 79.7 1.0
CB L:CYS31 3.9 118.6 1.0
SG L:CYS34 4.0 168.0 1.0
N L:ALA32 4.1 119.3 1.0
ND1 L:HIS53 4.2 111.3 1.0
C L:CYS31 4.2 118.6 1.0
CA L:CYS48 4.2 174.8 1.0
N L:CYS51 4.3 236.0 1.0
CB L:HIS53 4.4 111.3 1.0
CG L:HIS53 4.5 111.3 1.0
O L:CYS31 4.5 118.6 1.0
C L:CYS51 4.5 236.0 1.0
N L:GLY52 4.5 163.4 1.0
CA L:CYS31 4.6 118.6 1.0
C L:CYS48 4.7 174.8 1.0
N L:HIS53 4.8 111.3 1.0
OD1 L:ASP50 4.8 251.4 1.0
CD2 L:LEU38 4.8 82.9 1.0
C L:ALA32 4.8 119.3 1.0
CE1 L:HIS53 4.9 111.3 1.0
C L:ILE30 4.9 79.7 1.0
CB L:CYS34 4.9 168.0 1.0
N L:CYS48 5.0 174.8 1.0
O L:CYS48 5.0 174.8 1.0

Zinc binding site 10 out of 15 in 8umh

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Zinc binding site 10 out of 15 in the Consensus Map of Picdeltatfiik FORM2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Consensus Map of Picdeltatfiik FORM2 within 5.0Å range:
probe atom residue distance (Å) B Occ
S:Zn401

b:539.9
occ:1.00
SG S:CYS271 2.3 316.9 1.0
SG S:CYS274 2.3 384.6 1.0
SG S:CYS299 2.3 344.4 1.0
SG S:CYS302 2.3 334.4 1.0
CB S:CYS271 3.0 316.9 1.0
CB S:CYS299 3.2 344.4 1.0
CB S:CYS274 3.5 384.6 1.0
CB S:CYS302 3.6 334.4 1.0
N S:CYS274 3.6 384.6 1.0
N S:CYS302 3.9 334.4 1.0
CA S:CYS274 4.1 384.6 1.0
CB S:ASN304 4.1 306.1 1.0
CA S:CYS302 4.3 334.4 1.0
N S:LYS275 4.4 274.3 1.0
CA S:CYS271 4.4 316.9 1.0
CB S:ALA301 4.4 321.6 1.0
C S:CYS274 4.5 384.6 1.0
CB S:LYS273 4.6 340.2 1.0
CA S:CYS299 4.6 344.4 1.0
N S:ASN304 4.7 306.1 1.0
C S:ALA301 4.7 321.6 1.0
C S:LYS273 4.7 340.2 1.0
N S:LYS273 4.7 340.2 1.0
N S:GLU276 4.7 281.3 1.0
N S:GLY303 4.8 317.6 1.0
N S:ALA301 4.9 321.6 1.0
CA S:ALA301 4.9 321.6 1.0
CA S:LYS273 4.9 340.2 1.0
CD S:LYS273 4.9 340.2 1.0
CB S:GLU276 5.0 281.3 1.0

Reference:

C.Yang, K.Murakami. Consensus Map of Picdeltatfiik FORM2 To Be Published.
Page generated: Wed Nov 13 13:43:48 2024

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