Zinc in PDB 8sqk: Sars-Cov-2 Replication-Transcription Complex Bound to Rna-NSP9 and Gdp-Betas, As A Pre-Catalytic Dernaylation/Mrna Capping Intermediate

Enzymatic activity of Sars-Cov-2 Replication-Transcription Complex Bound to Rna-NSP9 and Gdp-Betas, As A Pre-Catalytic Dernaylation/Mrna Capping Intermediate

Other elements in 8sqk:

Zinc Binding Sites:

Zinc binding site 1 out of 2 in 8sqk

Zinc Binding Sites List in 8sqk

Zinc binding site 1 out of 2 in the Sars-Cov-2 Replication-Transcription Complex Bound to Rna-NSP9 and Gdp-Betas, As A Pre-Catalytic Dernaylation/Mrna Capping Intermediate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Sars-Cov-2 Replication-Transcription Complex Bound to Rna-NSP9 and Gdp-Betas, As A Pre-Catalytic Dernaylation/Mrna Capping Intermediate within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1003 b:103.2 occ:1.00 ND1 A:HIS295 2.1 45.9 1.0 SG A:CYS310 2.3 30.3 1.0 SG A:CYS306 2.3 47.5 1.0 SG A:CYS301 2.3 31.7 1.0 CE1 A:HIS295 2.9 34.9 1.0 HE1 A:HIS295 3.0 38.0 1.0 HA A:CYS301 3.1 31.6 1.0 HB2 A:HIS295 3.1 37.3 1.0 CG A:HIS295 3.2 40.0 1.0 CB A:CYS301 3.4 32.3 1.0 HB3 A:CYS301 3.5 31.3 1.0 O A:CYS306 3.6 37.7 1.0 H A:HIS295 3.6 39.3 1.0 HB2 A:CYS310 3.7 33.6 1.0 CB A:HIS295 3.7 31.9 1.0 CB A:CYS310 3.7 29.5 1.0 CA A:CYS301 3.7 28.0 1.0 CB A:CYS306 3.8 19.3 1.0 HB3 A:CYS306 3.8 29.8 1.0 C A:CYS306 4.1 31.6 1.0 HB3 A:CYS310 4.1 34.2 1.0 NE2 A:HIS295 4.1 30.4 1.0 H A:LEU302 4.2 29.6 1.0 HB2 A:CYS301 4.2 31.6 1.0 CD2 A:HIS295 4.3 36.0 1.0 N A:HIS295 4.3 35.1 1.0 HB3 A:HIS295 4.4 38.1 1.0 O A:HOH1135 4.4 39.3 1.0 HD1 A:HIS309 4.4 31.9 1.0 H A:CYS310 4.4 32.7 1.0 CA A:CYS306 4.5 28.1 1.0 HB2 A:CYS306 4.5 29.6 1.0 N A:CYS301 4.5 30.5 1.0 HA A:ILE307 4.6 30.9 1.0 HA A:CYS306 4.6 31.7 1.0 CA A:HIS295 4.6 23.3 1.0 H A:CYS301 4.7 32.5 1.0 HA A:CYS298 4.8 37.7 1.0 HG23 A:THR293 4.8 44.1 1.0 HA A:TYR294 4.8 48.9 1.0 N A:LEU302 4.8 32.3 1.0 C A:CYS301 4.8 28.5 1.0 HE2 A:HIS295 4.8 37.9 1.0 N A:ILE307 4.9 31.1 1.0 O A:THR293 4.9 47.9 1.0 HG A:LEU302 4.9 28.9 1.0 CA A:CYS310 4.9 23.1 1.0 N A:CYS310 4.9 29.7 1.0

Zinc binding site 2 out of 2 in 8sqk

Zinc Binding Sites List in 8sqk

Zinc binding site 2 out of 2 in the Sars-Cov-2 Replication-Transcription Complex Bound to Rna-NSP9 and Gdp-Betas, As A Pre-Catalytic Dernaylation/Mrna Capping Intermediate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Sars-Cov-2 Replication-Transcription Complex Bound to Rna-NSP9 and Gdp-Betas, As A Pre-Catalytic Dernaylation/Mrna Capping Intermediate within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1004 b:94.3 occ:1.00 ND1 A:HIS642 2.1 34.3 1.0 SG A:CYS645 2.3 44.4 1.0 SG A:CYS487 2.3 30.2 1.0 SG A:CYS646 2.3 39.4 1.0 HB3 A:HIS642 2.5 30.0 1.0 CG A:HIS642 3.0 31.6 1.0 CE1 A:HIS642 3.2 25.9 1.0 CB A:HIS642 3.2 24.1 1.0 HE1 A:HIS642 3.4 30.5 1.0 HB2 A:CYS646 3.4 31.4 1.0 HE1 A:PHE571 3.5 29.9 1.0 CB A:CYS646 3.5 25.9 1.0 HB2 A:CYS645 3.6 34.3 1.0 CB A:CYS645 3.6 31.8 1.0 CB A:CYS487 3.9 40.8 1.0 H A:CYS646 3.9 32.5 1.0 HA A:HIS642 3.9 30.4 1.0 HB2 A:HIS642 3.9 29.4 1.0 H A:CYS487 3.9 33.9 1.0 N A:CYS646 3.9 34.2 1.0 HB2 A:CYS487 4.0 36.2 1.0 HA2 A:GLY486 4.1 31.6 1.0 CE1 A:PHE571 4.1 27.0 1.0 N A:CYS487 4.1 29.9 1.0 CA A:HIS642 4.2 28.3 1.0 CD2 A:HIS642 4.2 31.0 1.0 C A:CYS645 4.2 37.9 1.0 NE2 A:HIS642 4.3 24.1 1.0 HB3 A:CYS646 4.3 30.8 1.0 HD1 A:PHE571 4.3 30.8 1.0 CA A:CYS646 4.3 31.3 1.0 HB3 A:CYS645 4.3 35.0 1.0 HZ1 A:LYS532 4.4 32.1 1.0 CA A:CYS645 4.5 35.3 1.0 CA A:CYS487 4.5 38.0 1.0 HB3 A:CYS487 4.5 35.1 1.0 CD1 A:PHE571 4.6 33.4 1.0 H A:CYS645 4.6 35.3 1.0 C A:GLY486 4.6 31.6 1.0 HA A:CYS646 4.7 32.4 1.0 O A:HIS642 4.7 34.0 1.0 HA A:CYS487 4.7 35.2 1.0 HE2 A:LYS532 4.7 30.3 1.0 CA A:GLY486 4.8 29.9 1.0 O A:CYS645 4.9 43.0 1.0 C A:HIS642 4.9 32.6 1.0

Reference: