Zinc in PDB 8slg: Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Glycyl Adenylate Bound)

The structure of Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Glycyl Adenylate Bound), PDB code: 8slg was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.16 / 1.95
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	170.248, 87.108, 99.358, 90, 104.21, 90
R / Rfree (%)	17.4 / 20.1

The structure of Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Glycyl Adenylate Bound) also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Zinc atom in the Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Glycyl Adenylate Bound) (pdb code 8slg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Glycyl Adenylate Bound), PDB code: 8slg:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Glycyl Adenylate Bound)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Glycyl Adenylate Bound) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn502 b:150.2 occ:1.00 SG A:CYS90 2.3 122.2 1.0 SG A:CYS128 2.3 177.2 1.0 SG A:CYS125 2.3 152.2 1.0 SG A:CYS93 2.3 125.8 1.0 CB A:CYS90 3.1 127.1 1.0 CB A:CYS125 3.3 149.4 1.0 CB A:CYS128 3.4 166.8 1.0 N A:CYS128 3.7 166.0 1.0 CB A:CYS93 3.8 124.0 1.0 N A:CYS93 3.9 124.0 1.0 CA A:CYS128 4.1 168.3 1.0 CB A:ASP127 4.2 160.6 1.0 C A:ASP127 4.3 172.4 1.0 CA A:CYS93 4.4 120.7 1.0 CA A:CYS90 4.6 124.9 1.0 CA A:ASP127 4.6 164.4 1.0 CA A:CYS125 4.7 149.9 1.0 CB A:ASN92 4.7 113.3 1.0 N A:ASP127 4.7 160.7 1.0 C A:ASN92 4.9 123.7 1.0 N A:ASN92 4.9 131.3 1.0 C A:CYS128 4.9 165.7 1.0 C A:CYS93 5.0 122.7 1.0 CE1 A:HIS97 5.0 136.2 1.0 C A:CYS125 5.0 148.1 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Glycyl Adenylate Bound)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Glycyl Adenylate Bound) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn505 b:77.8 occ:1.00 SG B:CYS128 2.3 92.8 1.0 SG B:CYS93 2.3 75.4 1.0 SG B:CYS125 2.3 81.8 1.0 SG B:CYS90 2.3 72.7 1.0 CB B:CYS125 3.2 83.3 1.0 CB B:CYS90 3.2 75.0 1.0 CB B:CYS128 3.3 95.0 1.0 CB B:CYS93 3.4 85.0 1.0 N B:CYS128 3.7 101.8 1.0 N B:CYS93 3.9 78.5 1.0 CA B:CYS128 4.0 101.0 1.0 CA B:CYS93 4.2 79.4 1.0 CB B:ASP127 4.5 111.6 1.0 C B:ASP127 4.5 110.2 1.0 CA B:CYS125 4.6 89.7 1.0 N B:GLY129 4.7 106.3 1.0 C B:CYS128 4.7 100.7 1.0 CA B:CYS90 4.7 76.5 1.0 OG1 B:THR130 4.8 109.8 1.0 CB B:ASN92 4.9 98.7 1.0 CA B:ASP127 4.9 114.1 1.0 C B:CYS93 4.9 76.7 1.0 N B:ASP127 4.9 109.5 1.0 C B:ASN92 5.0 88.3 1.0

L.Liu, S.Lovell, K.P.Battaile, S.Seibold. Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Glycyl Adenylate Bound) To Be Published.