Zinc in PDB 8s24: Structure of the E3 Ubiquitin Ligase RNF213, Determined By Cryoem

All present enzymatic activity of Structure of the E3 Ubiquitin Ligase RNF213, Determined By Cryoem:
2.3.2.27;

The structure of Structure of the E3 Ubiquitin Ligase RNF213, Determined By Cryoem also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Zinc atom in the Structure of the E3 Ubiquitin Ligase RNF213, Determined By Cryoem (pdb code 8s24). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of the E3 Ubiquitin Ligase RNF213, Determined By Cryoem, PDB code: 8s24:

Zinc binding site 1 out of 1 in the Structure of the E3 Ubiquitin Ligase RNF213, Determined By Cryoem


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the E3 Ubiquitin Ligase RNF213, Determined By Cryoem within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn5303 b:133.1 occ:1.00 SG A:CYS4505 2.6 124.5 1.0 SG A:CYS4528 2.6 120.4 1.0 CB A:CYS4505 2.7 124.5 1.0 CB A:CYS4528 2.8 120.4 1.0 CB A:HIS4509 3.3 119.2 1.0 ND1 A:HIS4509 3.4 119.2 1.0 OD2 A:ASP4527 3.8 114.9 1.0 N A:CYS4528 3.8 120.4 1.0 CG A:HIS4509 3.8 119.2 1.0 CA A:CYS4528 3.9 120.4 1.0 O A:HIS4509 4.0 119.2 1.0 CA A:CYS4505 4.2 124.5 1.0 SG A:CYS4525 4.2 117.8 1.0 O A:ALA4530 4.3 121.4 1.0 CA A:HIS4509 4.4 119.2 1.0 ND2 A:ASN4507 4.5 122.9 1.0 N A:HIS4509 4.5 119.2 1.0 CG A:ASP4527 4.6 114.9 1.0 CE1 A:HIS4509 4.6 119.2 1.0 C A:HIS4509 4.6 119.2 1.0 CB A:ASN4507 4.7 122.9 1.0 C A:CYS4528 4.7 120.4 1.0 N A:CYS4505 4.7 124.5 1.0 CB A:ASP4527 4.8 114.9 1.0 C A:ASP4527 4.9 114.9 1.0 CG A:ASN4507 5.0 122.9 1.0 C A:CYS4505 5.0 124.5 1.0

A.C.Casado, P.Pothukuchi, K.Naydenova, M.C.J.Yip, J.M.Young, J.Boulanger, V.Dharamdasani, C.Harper, P.M.Hammoudi, E.G.Otten, K.Boyle, M.Gogoi, H.S.Malik, F.Randow. Recognition of Phylogenetically Diverse Pathogens Through Enzymatically Amplified Recruitment of RNF213 Embo J. 2024.
ISSN: ESSN 1460-2075