Zinc in PDB 8qrn: Mt-Ssu in GTPBP8 Knock-Out Cells, State 4

The structure of Mt-Ssu in GTPBP8 Knock-Out Cells, State 4 also contains other interesting chemical elements:

Potassium	(K)	18 atoms
Iron	(Fe)	4 atoms
Magnesium	(Mg)	58 atoms

The binding sites of Zinc atom in the Mt-Ssu in GTPBP8 Knock-Out Cells, State 4 (pdb code 8qrn). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Mt-Ssu in GTPBP8 Knock-Out Cells, State 4, PDB code: 8qrn:

Zinc binding site 1 out of 1 in the Mt-Ssu in GTPBP8 Knock-Out Cells, State 4


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Mt-Ssu in GTPBP8 Knock-Out Cells, State 4 within 5.0Å range: probe atom residue distance (Å) B Occ O:Zn301 b:136.7 occ:1.00 SG O:CYS105 2.2 59.7 1.0 SG O:CYS108 2.3 74.0 1.0 SG O:CYS143 2.4 68.4 1.0 SG O:CYS94 2.4 77.5 1.0 CB O:CYS94 3.2 69.5 1.0 CB O:CYS108 3.3 65.6 1.0 CB O:CYS143 3.4 46.2 1.0 CB O:CYS105 3.5 53.4 1.0 N O:CYS94 3.8 66.7 1.0 N O:CYS143 4.1 45.8 1.0 CA O:CYS94 4.1 66.6 1.0 CG O:GLN146 4.2 57.0 1.0 N O:CYS105 4.2 54.2 1.0 N O:CYS108 4.3 57.8 1.0 CA O:CYS143 4.4 32.6 1.0 CA O:CYS108 4.4 64.8 1.0 CA O:CYS105 4.4 47.5 1.0 C O:THR93 4.8 59.6 1.0 CB O:GLN146 4.9 51.0 1.0 CA O:THR93 5.0 54.5 1.0

M.Cipullo, G.Valentin Gese, S.Gopalakrishna, A.Krueger, V.Lobo, M.A.Pirozhkova, J.Marks, P.Palenkova, D.Shiriaev, Y.Liu, J.Misic, Y.Cai, M.Nguyen, A.Abdelbagi, X.Li, M.Minczuk, M.Hafner, D.Benhalevy, A.A.Sarshad, I.Attanasov, B.M.Hallberg, J.Rorbach. GTPBP8 Plays A Role in Mitoribosome Formation in Human Mitochondria Nat Commun 2024.
ISSN: ESSN 2041-1723