Zinc in PDB 8qrk: Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 1

The structure of Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 1 also contains other interesting chemical elements:

Iron	(Fe)	4 atoms
Potassium	(K)	17 atoms
Magnesium	(Mg)	49 atoms

The binding sites of Zinc atom in the Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 1 (pdb code 8qrk). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 1, PDB code: 8qrk:

Zinc binding site 1 out of 1 in the Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Mt-Ssu Assembly Intermediate in GTPBP8 Knock-Out Cells, State 1 within 5.0Å range: probe atom residue distance (Å) B Occ O:Zn301 b:421.0 occ:1.00 SG O:CYS105 2.2 333.1 1.0 SG O:CYS108 2.3 350.9 1.0 SG O:CYS143 2.4 330.9 1.0 SG O:CYS94 2.4 349.1 1.0 CB O:CYS94 3.2 349.9 1.0 CB O:CYS108 3.3 344.9 1.0 CB O:CYS143 3.4 324.8 1.0 CB O:CYS105 3.5 331.1 1.0 N O:CYS94 3.8 346.2 1.0 N O:CYS143 4.1 331.6 1.0 CA O:CYS94 4.1 348.2 1.0 CG O:GLN146 4.2 339.9 1.0 N O:CYS105 4.2 326.2 1.0 N O:CYS108 4.3 337.0 1.0 CA O:CYS143 4.4 325.6 1.0 CA O:CYS108 4.4 340.8 1.0 CA O:CYS105 4.4 328.4 1.0 C O:THR93 4.8 330.6 1.0 CB O:GLN146 4.9 338.8 1.0 CA O:THR93 5.0 329.1 1.0

M.Cipullo, G.Valentin Gese, S.Gopalakrishna, A.Krueger, V.Lobo, M.A.Pirozhkova, J.Marks, P.Palenkova, D.Shiriaev, Y.Liu, J.Misic, Y.Cai, M.Nguyen, A.Abdelbagi, X.Li, M.Minczuk, M.Hafner, D.Benhalevy, A.A.Sarshad, I.Attanasov, B.M.Hallberg, J.Rorbach. GTPBP8 Is Essential For Mitoribosome Formation in Human Mitochondria Nat Commun 2024.
ISSN: ESSN 2041-1723