Zinc in PDB 8qeo: Cryo-Em Structure Complex of Frizzled-7 and Clostridioides Difficile Toxin B

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure Complex of Frizzled-7 and Clostridioides Difficile Toxin B (pdb code 8qeo). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure Complex of Frizzled-7 and Clostridioides Difficile Toxin B, PDB code: 8qeo:

Zinc binding site 1 out of 1 in 8qeo

Go back to Zinc Binding Sites List in 8qeo
Zinc binding site 1 out of 1 in the Cryo-Em Structure Complex of Frizzled-7 and Clostridioides Difficile Toxin B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure Complex of Frizzled-7 and Clostridioides Difficile Toxin B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2800

b:45.0
occ:1.00
ND1 A:HIS653 2.0 2.5 1.0
SG A:CYS698 2.2 14.2 1.0
CB A:HIS653 2.5 3.2 1.0
CG A:HIS653 2.6 3.2 1.0
NE2 A:HIS757 2.7 0.0 1.0
CB A:CYS698 3.1 1.2 1.0
CA A:HIS653 3.2 2.1 1.0
CE1 A:HIS653 3.2 7.0 1.0
OD1 A:ASP546 3.3 25.2 1.0
OD2 A:ASP546 3.4 27.4 1.0
CE1 A:HIS757 3.6 2.8 1.0
CG A:ASP546 3.7 24.4 1.0
CD2 A:HIS757 3.7 4.9 1.0
N A:GLY654 3.8 0.0 1.0
CD2 A:HIS653 3.8 6.5 1.0
N A:CYS698 3.9 0.0 1.0
C A:HIS653 4.0 5.1 1.0
CA A:CYS698 4.0 0.0 1.0
NE2 A:HIS653 4.1 7.9 1.0
O A:GLY652 4.3 5.8 1.0
N A:HIS653 4.4 1.1 1.0
O A:CYS698 4.4 16.9 1.0
C A:CYS698 4.6 5.6 1.0
O A:GLY654 4.6 8.5 1.0
OE1 A:GLU545 4.6 39.6 1.0
ND1 A:HIS757 4.8 3.8 1.0
C A:GLY652 4.8 1.8 1.0
CG A:HIS757 4.9 4.8 1.0

Reference:

J.Kinsolving, J.Bous, P.Kozielewicz, S.Kosenina, R.Shekhani, L.Gratz, G.Masuyer, Y.Wang, P.Stenmark, M.Dong, G.Schulte. Structural and Functional Insight Into the Interaction of Clostridioides Difficile Toxin B and Fzd 7. Cell Rep V. 43 13727 2024.
ISSN: ESSN 2211-1247
PubMed: 38308843
DOI: 10.1016/J.CELREP.2024.113727
Page generated: Thu Oct 31 10:01:29 2024

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