Zinc in PDB 8q5a: Crystal Structure of Metal-Dependent Class II Sulfofructosephosphate Aldolase From Hafnia Paralvei Hpsqia-Zn in Complex with Dihydroxyacetone Phosphate (Dhap)

The structure of Crystal Structure of Metal-Dependent Class II Sulfofructosephosphate Aldolase From Hafnia Paralvei Hpsqia-Zn in Complex with Dihydroxyacetone Phosphate (Dhap), PDB code: 8q5a was solved by M.Sharma, G.J.Davies, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.00 / 2.80
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	64.605, 87.669, 103.3, 90, 90, 90
R / Rfree (%)	20.8 / 27.4

The binding sites of Zinc atom in the Crystal Structure of Metal-Dependent Class II Sulfofructosephosphate Aldolase From Hafnia Paralvei Hpsqia-Zn in Complex with Dihydroxyacetone Phosphate (Dhap) (pdb code 8q5a). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Metal-Dependent Class II Sulfofructosephosphate Aldolase From Hafnia Paralvei Hpsqia-Zn in Complex with Dihydroxyacetone Phosphate (Dhap), PDB code: 8q5a:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Metal-Dependent Class II Sulfofructosephosphate Aldolase From Hafnia Paralvei Hpsqia-Zn in Complex with Dihydroxyacetone Phosphate (Dhap)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Metal-Dependent Class II Sulfofructosephosphate Aldolase From Hafnia Paralvei Hpsqia-Zn in Complex with Dihydroxyacetone Phosphate (Dhap) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:49.3 occ:0.70 CE1 A:HIS83 1.9 44.6 0.3 NE2 A:HIS180 1.9 87.1 1.0 NE2 A:HIS83 2.0 51.1 0.7 ND1 A:HIS208 2.2 33.1 0.7 O3 A:13P303 2.3 49.7 0.7 NE2 A:HIS83 2.3 43.8 0.3 O2 A:13P303 2.6 46.4 0.7 CE1 A:HIS180 2.7 89.2 1.0 ZN A:ZN302 2.8 50.2 0.3 CE1 A:HIS83 2.9 50.7 0.7 CD2 A:HIS83 3.0 51.0 0.7 CG A:HIS208 3.1 32.3 0.7 CD2 A:HIS180 3.1 94.7 1.0 CE1 A:HIS208 3.2 36.6 0.7 ND1 A:HIS83 3.2 44.2 0.3 C2 A:13P303 3.2 55.2 0.7 CB A:HIS208 3.3 44.5 0.3 CG A:HIS208 3.3 44.0 0.3 C3 A:13P303 3.3 52.9 0.7 CB A:HIS208 3.3 35.7 0.7 ND1 A:HIS208 3.5 45.7 0.3 CD2 A:HIS83 3.7 42.8 0.3 ND1 A:HIS180 3.9 98.9 1.0 CD2 A:HIS208 3.9 45.8 0.3 ND1 A:HIS83 4.0 47.1 0.7 CG A:HIS83 4.1 42.9 0.3 CG A:HIS180 4.1 101.8 1.0 CG A:HIS83 4.1 48.1 0.7 CE1 A:HIS208 4.2 47.1 0.3 CD2 A:HIS208 4.2 33.2 0.7 NE2 A:HIS208 4.2 35.7 0.7 CA A:HIS208 4.3 42.6 0.7 CA A:HIS208 4.3 46.8 0.3 ND2 A:ASN230 4.3 41.6 1.0 NE2 A:HIS208 4.5 46.4 0.3 OD2 A:ASP82 4.5 53.6 1.0 OD1 A:ASP82 4.5 46.6 1.0 C1 A:13P303 4.6 60.9 0.7 N A:GLY209 4.8 58.5 1.0 O1 A:13P303 4.9 63.5 0.7 C A:HIS208 4.9 53.2 1.0 CG A:ASP82 5.0 46.8 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Metal-Dependent Class II Sulfofructosephosphate Aldolase From Hafnia Paralvei Hpsqia-Zn in Complex with Dihydroxyacetone Phosphate (Dhap)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Metal-Dependent Class II Sulfofructosephosphate Aldolase From Hafnia Paralvei Hpsqia-Zn in Complex with Dihydroxyacetone Phosphate (Dhap) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:50.2 occ:0.30 CE1 A:HIS83 1.9 50.7 0.7 NE2 A:HIS83 2.0 43.8 0.3 NE2 A:HIS83 2.5 51.1 0.7 ND1 A:HIS208 2.5 45.7 0.3 ND1 A:HIS208 2.5 33.1 0.7 OE1 A:GLU134 2.8 54.0 1.0 ZN A:ZN301 2.8 49.3 0.7 CD2 A:HIS83 2.9 42.8 0.3 ND1 A:HIS83 3.1 47.1 0.7 CE1 A:HIS180 3.1 89.2 1.0 CE1 A:HIS83 3.1 44.6 0.3 CE1 A:HIS208 3.1 36.6 0.7 CE1 A:HIS208 3.3 47.1 0.3 CG A:HIS208 3.3 32.3 0.7 CG A:HIS208 3.4 44.0 0.3 NE2 A:HIS180 3.6 87.1 1.0 CD2 A:HIS83 3.8 51.0 0.7 CB A:HIS208 3.8 44.5 0.3 CB A:HIS208 3.8 35.7 0.7 CD A:GLU134 3.8 57.4 1.0 NE2 A:HIS208 4.0 35.7 0.7 CG A:HIS83 4.1 48.1 0.7 CD2 A:HIS208 4.1 33.2 0.7 CG A:HIS83 4.1 42.9 0.3 OE2 A:GLU134 4.1 62.4 1.0 ND1 A:HIS83 4.2 44.2 0.3 NE2 A:HIS208 4.3 46.4 0.3 CB A:ILE138 4.3 92.1 1.0 ND1 A:HIS180 4.3 98.9 1.0 CD2 A:HIS208 4.3 45.8 0.3 CE A:MET102 4.4 43.8 1.0 OD2 A:ASP104 4.4 47.5 1.0 CG2 A:ILE138 4.5 90.9 1.0 CD1 A:ILE138 4.6 99.5 1.0 CG1 A:ILE138 4.7 99.0 1.0 CD2 A:HIS180 4.9 94.7 1.0 O3 A:13P303 4.9 49.7 0.7

M.Sharma, A.Kaur, N.M.Soler, J.P.Lingford, R.Epa, E.D.Goddard-Borger, G.J.Davies, S.J.Williams. Defining the Molecular Architecture, Metal Dependence, and Distribution of Metal-Dependent Class II Sulfofructose-1-Phosphate Aldolases. J.Biol.Chem. 05338 2023.
ISSN: ESSN 1083-351X
PubMed: 37838169
DOI: 10.1016/J.JBC.2023.105338