Zinc in PDB 8q58: Crystal Structure of Metal-Dependent Classii Sulfofructosephosphate Aldolase (Sfpa) From Hafnia Paralvei Hpsqia-Zn

The structure of Crystal Structure of Metal-Dependent Classii Sulfofructosephosphate Aldolase (Sfpa) From Hafnia Paralvei Hpsqia-Zn, PDB code: 8q58 was solved by M.Sharma, G.J.Davies, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	63.01 / 1.70
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	60.332, 88.49, 126.805, 90, 90, 90
R / Rfree (%)	18.5 / 20.1

The binding sites of Zinc atom in the Crystal Structure of Metal-Dependent Classii Sulfofructosephosphate Aldolase (Sfpa) From Hafnia Paralvei Hpsqia-Zn (pdb code 8q58). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Metal-Dependent Classii Sulfofructosephosphate Aldolase (Sfpa) From Hafnia Paralvei Hpsqia-Zn, PDB code: 8q58:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Metal-Dependent Classii Sulfofructosephosphate Aldolase (Sfpa) From Hafnia Paralvei Hpsqia-Zn


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Metal-Dependent Classii Sulfofructosephosphate Aldolase (Sfpa) From Hafnia Paralvei Hpsqia-Zn within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:26.0 occ:0.80 OE1 A:GLU134 1.9 27.6 1.0 NE2 A:HIS83 2.1 25.6 0.8 NE2 A:HIS180 2.2 49.0 1.0 ND1 A:HIS208 2.2 20.1 0.5 CE1 A:HIS83 2.3 25.1 0.2 O A:HOH434 2.6 32.2 1.0 CD A:GLU134 2.7 31.8 1.0 OE2 A:GLU134 2.8 32.8 1.0 NE2 A:HIS83 2.8 25.1 0.2 CD2 A:HIS208 2.9 42.8 0.5 CD2 A:HIS180 2.9 61.4 1.0 CE1 A:HIS208 3.0 23.5 0.5 CE1 A:HIS83 3.0 27.8 0.8 CD2 A:HIS83 3.2 25.8 0.8 CE1 A:HIS180 3.3 34.3 1.0 CG A:HIS208 3.3 33.8 0.5 NE2 A:HIS208 3.4 38.5 0.5 ZN A:ZN302 3.4 34.9 0.2 CG A:HIS208 3.4 21.2 0.5 ND1 A:HIS83 3.5 25.0 0.2 CB A:HIS208 3.9 29.2 0.5 CB A:HIS208 3.9 23.3 0.5 ND1 A:HIS208 3.9 38.2 0.5 CE1 A:HIS208 3.9 34.0 0.5 CG A:HIS180 4.1 63.5 1.0 CG A:GLU134 4.2 26.8 1.0 CD2 A:HIS83 4.2 25.3 0.2 O A:HOH445 4.2 32.8 1.0 ND1 A:HIS83 4.2 27.5 0.8 NE2 A:HIS208 4.2 17.5 0.5 ND1 A:HIS180 4.3 51.9 1.0 CG A:HIS83 4.3 25.2 0.8 O A:HOH515 4.3 42.5 1.0 CD2 A:HIS208 4.4 18.8 0.5 CE A:MET102 4.4 26.3 1.0 CG A:HIS83 4.4 23.9 0.2 OD2 A:ASP104 4.5 26.6 1.0 O A:HOH435 4.5 36.7 1.0 CB A:GLU134 4.8 23.4 1.0 CG A:ASP104 5.0 26.5 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Metal-Dependent Classii Sulfofructosephosphate Aldolase (Sfpa) From Hafnia Paralvei Hpsqia-Zn


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Metal-Dependent Classii Sulfofructosephosphate Aldolase (Sfpa) From Hafnia Paralvei Hpsqia-Zn within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:34.9 occ:0.20 NE2 A:HIS83 1.8 25.1 0.2 CE1 A:HIS83 1.9 27.8 0.8 NE2 A:HIS83 2.6 25.6 0.8 CD2 A:HIS83 2.7 25.3 0.2 ND1 A:HIS208 2.8 38.2 0.5 ND1 A:HIS83 2.9 27.5 0.8 CE1 A:HIS83 3.0 25.1 0.2 CG A:HIS208 3.1 33.8 0.5 ND1 A:HIS208 3.2 20.1 0.5 CG A:HIS208 3.2 21.2 0.5 CD2 A:HIS180 3.3 61.4 1.0 CB A:HIS208 3.3 23.3 0.5 CB A:HIS208 3.3 29.2 0.5 ZN A:ZN301 3.4 26.0 0.8 O A:HOH452 3.4 42.0 1.0 O A:HOH441 3.4 49.1 1.0 O A:HOH516 3.5 56.9 1.0 CE1 A:HIS208 3.5 34.0 0.5 NE2 A:HIS180 3.6 49.0 1.0 CD2 A:HIS83 3.7 25.8 0.8 CG A:HIS83 3.8 25.2 0.8 O A:HOH513 3.9 44.8 1.0 CE1 A:HIS208 3.9 23.5 0.5 CG A:HIS83 3.9 23.9 0.2 CD2 A:HIS208 3.9 42.8 0.5 CD2 A:HIS208 3.9 18.8 0.5 ND1 A:HIS83 4.0 25.0 0.2 NE2 A:HIS208 4.1 38.5 0.5 ND2 A:ASN230 4.2 28.5 1.0 NE2 A:HIS208 4.3 17.5 0.5 CA A:HIS208 4.3 26.9 0.5 CA A:HIS208 4.3 24.7 0.5 CG A:HIS180 4.5 63.5 1.0 OD1 A:ASP82 4.5 27.7 1.0 CE1 A:HIS180 4.8 34.3 1.0 O A:HOH515 5.0 42.5 1.0 OD2 A:ASP82 5.0 33.6 1.0 N A:GLY209 5.0 34.7 1.0

M.Sharma, A.Kaur, N.M.Soler, J.P.Lingford, R.Epa, E.D.Goddard-Borger, G.J.Davies, S.J.Williams. Defining the Molecular Architecture, Metal Dependence, and Distribution of Metal-Dependent Class II Sulfofructose-1-Phosphate Aldolases. J.Biol.Chem. 05338 2023.
ISSN: ESSN 1083-351X
PubMed: 37838169
DOI: 10.1016/J.JBC.2023.105338