Zinc in PDB 8p90: Target Complex 2

All present enzymatic activity of Target Complex 2:
3.1.4.54;

The structure of Target Complex 2, PDB code: 8p90 was solved by G.Garau, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.28 / 2.80
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	94.657, 94.657, 441.848, 90, 90, 120
R / Rfree (%)	27.1 / 29.5

The binding sites of Zinc atom in the Target Complex 2 (pdb code 8p90). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Target Complex 2, PDB code: 8p90:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Target Complex 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Target Complex 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:97.3 occ:1.00 NE2 A:HIS185 2.1 93.8 1.0 NE2 A:HIS253 2.1 104.9 1.0 ND1 A:HIS187 2.1 104.9 1.0 O12 A:3PE403 2.2 109.7 1.0 OD2 A:ASP284 2.5 100.0 1.0 CD2 A:HIS185 3.0 96.9 1.0 P A:3PE403 3.0 111.0 1.0 CE1 A:HIS185 3.0 96.3 1.0 CE1 A:HIS253 3.1 106.0 1.0 CD2 A:HIS253 3.1 104.5 1.0 CE1 A:HIS187 3.1 105.2 1.0 ZN A:ZN402 3.1 110.5 1.0 CG A:HIS187 3.2 103.9 1.0 O14 A:3PE403 3.3 104.3 1.0 CB A:HIS187 3.5 98.9 1.0 CG A:ASP284 3.5 101.9 1.0 NE2 A:HIS190 3.6 94.8 1.0 C1 A:3PE403 3.6 111.9 1.0 O11 A:3PE403 3.6 111.4 1.0 CB A:ASP284 3.8 102.7 1.0 CD2 A:HIS190 3.8 97.6 1.0 OD2 A:ASP189 4.0 99.1 1.0 OD1 A:ASP189 4.1 103.5 1.0 ND1 A:HIS185 4.1 98.1 1.0 CG A:HIS185 4.1 98.9 1.0 ND1 A:HIS253 4.2 106.7 1.0 CG A:HIS253 4.2 105.8 1.0 NE2 A:HIS321 4.2 109.4 1.0 NE2 A:HIS187 4.2 106.8 1.0 CD2 A:HIS187 4.3 103.1 1.0 CG A:ASP189 4.5 101.4 1.0 CE1 A:HIS190 4.6 97.9 1.0 O13 A:3PE403 4.6 109.7 1.0 OD1 A:ASP284 4.7 104.8 1.0 CE1 A:HIS321 4.7 108.0 1.0 CG A:HIS190 4.9 97.6 1.0 NE1 A:TRP254 4.9 109.6 1.0 CA A:HIS187 5.0 100.2 1.0

Zinc binding site 2 out of 4 in the Target Complex 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Target Complex 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn402 b:110.5 occ:1.00 OD2 A:ASP189 1.8 99.1 1.0 OD2 A:ASP284 2.0 100.0 1.0 NE2 A:HIS190 2.1 94.8 1.0 O14 A:3PE403 2.2 104.3 1.0 NE2 A:HIS343 2.3 101.5 1.0 CG A:ASP189 2.9 101.4 1.0 CG A:ASP284 3.0 101.9 1.0 CE1 A:HIS190 3.1 97.9 1.0 CD2 A:HIS190 3.1 97.6 1.0 ZN A:ZN401 3.1 97.3 1.0 CE1 A:HIS343 3.2 100.2 1.0 CD2 A:HIS343 3.3 102.0 1.0 P A:3PE403 3.4 111.0 1.0 OD1 A:ASP284 3.4 104.8 1.0 OD1 A:ASP189 3.5 103.5 1.0 O12 A:3PE403 3.9 109.7 1.0 NE2 A:HIS185 4.1 93.8 1.0 CB A:ASP189 4.1 94.6 1.0 NE2 A:HIS321 4.1 109.4 1.0 CD1 A:LEU349 4.1 107.3 1.0 ND1 A:HIS190 4.2 99.1 1.0 O11 A:3PE403 4.2 111.4 1.0 CG A:HIS190 4.2 97.6 1.0 CE1 A:HIS185 4.3 96.3 1.0 NE2 A:HIS132 4.3 100.7 1.0 CE1 A:HIS321 4.3 108.0 1.0 CB A:ASP284 4.3 102.7 1.0 ND1 A:HIS343 4.4 104.8 1.0 CG A:HIS343 4.5 102.0 1.0 CD2 A:HIS132 4.6 102.1 1.0 O13 A:3PE403 4.7 109.7 1.0 NE2 A:HIS253 4.7 104.9 1.0 ND1 A:HIS187 5.0 104.9 1.0

Zinc binding site 3 out of 4 in the Target Complex 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Target Complex 2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn603 b:88.7 occ:1.00 NE2 B:HIS253 2.3 92.3 1.0 O12 B:3PE605 2.3 100.7 1.0 NE2 B:HIS185 2.3 85.5 1.0 ND1 B:HIS187 2.3 93.1 1.0 OD2 B:ASP284 2.7 88.8 1.0 P B:3PE605 3.1 97.1 1.0 CE1 B:HIS187 3.1 89.1 1.0 CE1 B:HIS253 3.1 93.2 1.0 CD2 B:HIS185 3.2 84.4 1.0 ZN B:ZN604 3.2 89.2 1.0 CE1 B:HIS185 3.3 86.0 1.0 CG B:HIS187 3.3 90.0 1.0 CD2 B:HIS253 3.3 89.4 1.0 C1 B:3PE605 3.3 103.6 1.0 O14 B:3PE605 3.5 100.9 1.0 O11 B:3PE605 3.5 102.5 1.0 CG B:ASP284 3.7 91.1 1.0 CB B:HIS187 3.7 87.0 1.0 NE2 B:HIS190 3.9 87.4 1.0 CB B:ASP284 4.0 90.9 1.0 CD2 B:HIS190 4.0 89.1 1.0 NE2 B:HIS187 4.2 91.6 1.0 ND1 B:HIS253 4.3 90.5 1.0 CG B:HIS185 4.3 86.9 1.0 ND1 B:HIS185 4.3 87.5 1.0 CD2 B:HIS187 4.3 93.1 1.0 OD1 B:ASP189 4.4 97.0 1.0 OD2 B:ASP189 4.4 87.2 1.0 CG B:HIS253 4.4 91.9 1.0 NE2 B:HIS321 4.6 100.3 1.0 O13 B:3PE605 4.6 112.4 1.0 CE1 B:HIS321 4.7 95.8 1.0 OD1 B:ASP284 4.7 95.3 1.0 CG B:ASP189 4.8 89.2 1.0 C2 B:3PE605 4.8 106.0 1.0 NE1 B:TRP254 4.9 98.1 1.0 CE1 B:HIS190 5.0 85.1 1.0

Zinc binding site 4 out of 4 in the Target Complex 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Target Complex 2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn604 b:89.2 occ:1.00 OD2 B:ASP284 2.1 88.8 1.0 OD2 B:ASP189 2.1 87.2 1.0 O14 B:3PE605 2.2 100.9 1.0 NE2 B:HIS190 2.2 87.4 1.0 NE2 B:HIS343 2.4 88.9 1.0 CE1 B:HIS343 3.0 85.5 1.0 CG B:ASP284 3.1 91.1 1.0 ZN B:ZN603 3.2 88.7 1.0 CD2 B:HIS190 3.2 89.1 1.0 P B:3PE605 3.2 97.1 1.0 CE1 B:HIS190 3.2 85.1 1.0 CG B:ASP189 3.3 89.2 1.0 OD1 B:ASP284 3.5 95.3 1.0 CD2 B:HIS343 3.7 85.5 1.0 O12 B:3PE605 3.7 100.7 1.0 OD1 B:ASP189 3.8 97.0 1.0 NE2 B:HIS132 3.9 86.2 1.0 CE1 B:HIS321 4.0 95.8 1.0 O11 B:3PE605 4.1 102.5 1.0 CD1 B:LEU349 4.2 95.5 1.0 NE2 B:HIS321 4.2 100.3 1.0 NE2 B:HIS185 4.2 85.5 1.0 ND1 B:HIS343 4.3 92.9 1.0 ND1 B:HIS190 4.3 87.0 1.0 CE1 B:HIS185 4.3 86.0 1.0 CG B:HIS190 4.4 86.7 1.0 CB B:ASP284 4.4 90.9 1.0 CB B:ASP189 4.5 89.1 1.0 O13 B:3PE605 4.5 112.4 1.0 CG B:HIS343 4.6 92.4 1.0 CE1 B:HIS132 4.7 90.9 1.0 NE2 B:HIS253 4.8 92.3 1.0 CD2 B:HIS132 4.8 89.9 1.0 C1 B:3PE605 4.8 103.6 1.0

G.Garau, G.Garau. N/A N/A.