Zinc in PDB 8p5q: Structure of An Alog Domain From Arabidopsis Thaliana in Complex with Dna

The structure of Structure of An Alog Domain From Arabidopsis Thaliana in Complex with Dna, PDB code: 8p5q was solved by C.Zubieta, M.H.Nanao, P.Rieu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.69 / 2.14
Space group	P 43 2 2
Cell size a, b, c (Å), α, β, γ (°)	79.798, 79.798, 127.012, 90, 90, 90
R / Rfree (%)	21.4 / 25.2

The binding sites of Zinc atom in the Structure of An Alog Domain From Arabidopsis Thaliana in Complex with Dna (pdb code 8p5q). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of An Alog Domain From Arabidopsis Thaliana in Complex with Dna, PDB code: 8p5q:

Zinc binding site 1 out of 1 in the Structure of An Alog Domain From Arabidopsis Thaliana in Complex with Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of An Alog Domain From Arabidopsis Thaliana in Complex with Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:59.4 occ:1.00 ND1 A:HIS61 2.1 48.4 1.0 SG A:CYS79 2.3 58.9 1.0 SG A:CYS65 2.3 57.9 1.0 SG A:CYS77 2.3 62.5 1.0 CE1 A:HIS61 2.9 62.8 1.0 CB A:CYS65 3.1 50.7 1.0 CG A:HIS61 3.2 62.1 1.0 CB A:CYS79 3.2 60.5 1.0 CB A:CYS77 3.2 54.1 1.0 CB A:HIS61 3.6 52.9 1.0 CA A:HIS61 4.0 56.1 1.0 NE2 A:HIS61 4.1 53.7 1.0 CD2 A:HIS61 4.2 48.2 1.0 N A:CYS79 4.4 58.4 1.0 CA A:CYS79 4.4 56.5 1.0 CB A:PHE67 4.4 75.5 1.0 CD2 A:PHE67 4.5 78.4 1.0 CA A:CYS65 4.6 62.5 1.0 CA A:CYS77 4.6 76.9 1.0 N A:THR62 4.7 45.7 1.0 C A:CYS77 4.9 61.4 1.0 C A:HIS61 5.0 60.6 1.0 CE A:LYS59 5.0 65.4 1.0 N A:PHE67 5.0 56.8 1.0 CG A:PHE67 5.0 69.1 1.0

P.Rieu, J.Lucas, E.Thevenon, R.Dumas, V.Beretta, F.Caselli, E.Franchini, E.Caporali, M.Kater, C.Zubieta, M.H.Nanao, V.Gregis, F.Parcy. Structure of An Alog Domain From Arabidopsis Thaliana in Complex with Dna To Be Published.