Zinc in PDB 8p23: Cryo-Em Structure of the Anaerobic Ribonucleotide Reductase From Prevotella Copri in Its Dimeric, Atp/Ctp-Bound State

The binding sites of Zinc atom in the Cryo-Em Structure of the Anaerobic Ribonucleotide Reductase From Prevotella Copri in Its Dimeric, Atp/Ctp-Bound State (pdb code 8p23). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of the Anaerobic Ribonucleotide Reductase From Prevotella Copri in Its Dimeric, Atp/Ctp-Bound State, PDB code: 8p23:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of the Anaerobic Ribonucleotide Reductase From Prevotella Copri in Its Dimeric, Atp/Ctp-Bound State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of the Anaerobic Ribonucleotide Reductase From Prevotella Copri in Its Dimeric, Atp/Ctp-Bound State within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn804 b:123.7 occ:1.00 N B:CYS698 2.1 105.1 1.0 SG B:CYS698 2.3 105.1 1.0 SG B:CYS683 2.3 102.5 1.0 SG B:CYS695 2.3 104.7 1.0 CB B:CYS698 2.5 105.1 1.0 CA B:CYS698 2.8 105.1 1.0 CB B:CYS683 3.0 102.5 1.0 C B:LYS697 3.1 105.3 1.0 CB B:LYS697 3.3 105.3 1.0 N B:CYS683 3.3 102.5 1.0 CA B:LYS697 3.5 105.3 1.0 N B:LYS697 3.6 105.3 1.0 CB B:CYS695 3.8 104.7 1.0 CA B:CYS683 3.8 102.5 1.0 C B:CYS698 3.9 105.1 1.0 O B:CYS698 3.9 105.1 1.0 O B:LYS697 4.2 105.3 1.0 CG B:LYS697 4.5 105.3 1.0 N B:GLY684 4.6 95.5 1.0 CB B:TYR685 4.7 96.7 1.0 C B:CYS683 4.7 102.5 1.0 C B:CYS695 4.8 104.7 1.0 C B:PRO696 4.9 103.5 1.0 CA B:CYS695 4.9 104.7 1.0 CD B:LYS697 4.9 105.3 1.0 N B:TYR685 5.0 96.7 1.0 N B:PRO696 5.0 103.5 1.0

O.Bimai, I.Banerjee, I.Rozman Grinberg, P.Huang, D.Lundin, B.M.Sjoberg, D.T.Logan. Activity Modulation in Anaerobic Ribonucleotide Reductase: Nucleotide Binding to the Atp-Cone Mediates Long-Range Order-Disorder Transitions in the Active Site Elife 2023.
ISSN: ESSN 2050-084X
DOI: 10.7554/ELIFE.89292.1