Zinc in PDB 8oso: Gtpase Hras in Complex with Zn-Cyclen Under 500 Mpa Pressure

All present enzymatic activity of Gtpase Hras in Complex with Zn-Cyclen Under 500 Mpa Pressure:
3.6.5.2;

The structure of Gtpase Hras in Complex with Zn-Cyclen Under 500 Mpa Pressure, PDB code: 8oso was solved by N.Colloc'h, T.Prange, E.Girard, H.R.Kalbitzer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.73 / 2.50
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	38.612, 38.612, 159.814, 90, 90, 120
R / Rfree (%)	23.3 / 28

The structure of Gtpase Hras in Complex with Zn-Cyclen Under 500 Mpa Pressure also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Zinc atom in the Gtpase Hras in Complex with Zn-Cyclen Under 500 Mpa Pressure (pdb code 8oso). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Gtpase Hras in Complex with Zn-Cyclen Under 500 Mpa Pressure, PDB code: 8oso:

Zinc binding site 1 out of 1 in the Gtpase Hras in Complex with Zn-Cyclen Under 500 Mpa Pressure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Gtpase Hras in Complex with Zn-Cyclen Under 500 Mpa Pressure within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn205 b:29.7 occ:0.50 O1G A:GNP201 1.9 19.7 1.0 N3 A:YCN204 2.0 27.3 0.5 N4 A:YCN204 2.1 27.6 0.5 N2 A:YCN204 2.2 27.2 0.5 N1 A:YCN204 2.2 26.8 0.5 C2 A:YCN204 2.4 26.9 0.5 C1 A:YCN204 2.8 26.9 0.5 C3 A:YCN204 2.9 26.8 0.5 C4 A:YCN204 3.0 27.1 0.5 C6 A:YCN204 3.1 27.9 0.5 C5 A:YCN204 3.1 27.5 0.5 C7 A:YCN204 3.2 27.1 0.5 PG A:GNP201 3.2 19.3 1.0 C8 A:YCN204 3.2 26.9 0.5 NE2 A:GLN61 3.5 31.9 1.0 O2G A:GNP201 3.7 18.5 1.0 OE1 A:GLN61 3.8 31.9 1.0 CD A:GLN61 4.0 31.9 1.0 N3B A:GNP201 4.0 17.0 1.0 O A:HOH338 4.2 22.9 1.0 O3G A:GNP201 4.4 19.0 1.0 MG A:MG202 4.5 22.7 1.0

E.Girard, P.Lopes, M.Spoerner, A.C.Dhaussy, T.Prange, H.R.Kalbitzer, N.Colloc'h. High Pressure Promotes Binding of the Allosteric Inhibitor ZN2+-Cyclen in Crystals of Activated H-Ras. Chemistry 00304 2024.
ISSN: ISSN 0947-6539
PubMed: 38647362
DOI: 10.1002/CHEM.202400304