Zinc in PDB 8kce: Structure of RVY_06210 at 1.05 Angstrom Resolution

The structure of Structure of RVY_06210 at 1.05 Angstrom Resolution, PDB code: 8kce was solved by S.Kato, Y.Fukuda, T.Inoue, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.02 / 1.05
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	89.362, 64.02, 45.987, 90, 109.54, 90
R / Rfree (%)	12.9 / 15.5

The structure of Structure of RVY_06210 at 1.05 Angstrom Resolution also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Zinc atom in the Structure of RVY_06210 at 1.05 Angstrom Resolution (pdb code 8kce). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of RVY_06210 at 1.05 Angstrom Resolution, PDB code: 8kce:

Zinc binding site 1 out of 1 in the Structure of RVY_06210 at 1.05 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of RVY_06210 at 1.05 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:8.0 occ:0.96 OE2 A:GLU31 2.0 8.8 1.0 OE1 A:GLU70 2.0 9.3 1.0 ND1 A:HIS73 2.0 9.0 1.0 OD1 A:ASP142 2.1 10.2 1.0 OD2 A:ASP142 2.5 10.6 1.0 CG A:ASP142 2.7 9.1 1.0 CD A:GLU31 2.8 9.0 1.0 CE1 A:HIS73 2.9 8.7 1.0 CD A:GLU70 3.0 8.1 1.0 OE1 A:GLU31 3.1 10.6 1.0 HE1 A:HIS73 3.1 10.5 1.0 CG A:HIS73 3.1 8.6 1.0 OE2 A:GLU70 3.3 9.4 1.0 O A:HOH441 3.3 10.8 1.0 HB2 A:HIS73 3.3 10.2 1.0 HH A:TYR119 3.4 12.0 0.0 MG A:MG302 3.4 8.4 1.0 HB3 A:HIS73 3.4 10.2 1.0 CB A:HIS73 3.5 8.5 1.0 HA A:GLU70 3.7 9.9 1.0 OH A:TYR119 4.0 10.0 1.0 HE1 A:TYR119 4.0 11.6 1.0 NE2 A:HIS73 4.1 8.7 1.0 CB A:ASP142 4.1 8.0 1.0 CD2 A:HIS73 4.2 8.5 1.0 CG A:GLU31 4.2 9.6 1.0 HE1 A:HIS145 4.3 10.2 1.0 CG A:GLU70 4.3 8.9 1.0 HG3 A:GLU31 4.3 11.5 1.0 OD2 A:ASP115 4.4 9.4 1.0 HD1 A:HIS145 4.5 10.1 1.0 HB3 A:ASP142 4.5 9.6 1.0 HA A:ASP142 4.5 9.5 1.0 CE1 A:TYR119 4.6 9.7 1.0 HB3 A:GLU70 4.6 9.9 1.0 CA A:GLU70 4.6 8.3 1.0 HB2 A:ASP142 4.6 9.6 1.0 CZ A:TYR119 4.6 9.2 1.0 HG2 A:GLU70 4.7 10.7 1.0 HB1 A:ALA138 4.7 11.6 1.0 HG2 A:GLU31 4.7 11.5 1.0 H A:ASP142 4.8 10.0 1.0 CB A:GLU70 4.8 8.3 1.0 CG A:ASP115 4.8 10.1 1.0 OD1 A:ASP115 4.8 10.8 1.0 CA A:ASP142 4.8 7.9 1.0 CE1 A:HIS145 4.9 8.4 1.0 HE2 A:HIS73 4.9 10.5 0.0 HG3 A:GLU70 4.9 10.7 1.0 ND1 A:HIS145 5.0 8.4 1.0 OE1 A:GLU112 5.0 9.6 1.0

S.Kato, Y.Fukuda, T.Inoue. Metabolite Phosphatase From Anhydrobiotic Tardigrades To Be Published.