Zinc in PDB 8kbd: Structure of CMTAD1 Complexed with Caag

Protein crystallography data

The structure of Structure of CMTAD1 Complexed with Caag, PDB code: 8kbd was solved by Y.Xiao, Y.Feng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.76 / 3.15
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 138.719, 145.072, 149.989, 90, 90, 90
R / Rfree (%) 20.2 / 23.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of CMTAD1 Complexed with Caag (pdb code 8kbd). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of CMTAD1 Complexed with Caag, PDB code: 8kbd:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 8kbd

Go back to Zinc Binding Sites List in 8kbd
Zinc binding site 1 out of 2 in the Structure of CMTAD1 Complexed with Caag


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of CMTAD1 Complexed with Caag within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:76.5
occ:1.00
NZ A:LYS96 3.8 54.7 1.0
NZ G:LYS96 3.9 51.0 1.0
NZ J:LYS96 4.0 58.6 1.0
NZ I:LYS96 4.1 56.4 1.0
NZ H:LYS96 4.2 44.8 1.0
NZ B:LYS96 4.3 46.6 1.0
OE2 J:GLU99 4.9 52.0 1.0
OE2 A:GLU99 4.9 53.0 1.0
OE2 B:GLU99 5.0 50.6 1.0
OE2 G:GLU99 5.0 50.1 1.0

Zinc binding site 2 out of 2 in 8kbd

Go back to Zinc Binding Sites List in 8kbd
Zinc binding site 2 out of 2 in the Structure of CMTAD1 Complexed with Caag


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of CMTAD1 Complexed with Caag within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn201

b:77.8
occ:0.98
NZ E:LYS96 4.0 48.2 1.0
NZ F:LYS96 4.0 36.7 1.0
NZ L:LYS96 4.2 53.4 1.0
NZ C:LYS96 4.2 49.6 1.0
NZ D:LYS96 4.4 45.9 1.0
NZ K:LYS96 4.4 56.4 1.0
OE2 E:GLU99 4.8 44.4 1.0
OE2 F:GLU99 4.9 48.8 1.0
OE2 C:GLU99 4.9 47.7 1.0

Reference:

Y.Xiao, Y.Feng. Structure of CMTAD1 Complexed with Caag To Be Published.
Page generated: Thu Oct 31 08:38:48 2024

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