Zinc in PDB 8ka8: Cryo-Em Structure of Sars-Cov-2 Delta Rbd in Complex with Golden Hamster ACE2 (Local Refinement)

The binding sites of Zinc atom in the Cryo-Em Structure of Sars-Cov-2 Delta Rbd in Complex with Golden Hamster ACE2 (Local Refinement) (pdb code 8ka8). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Sars-Cov-2 Delta Rbd in Complex with Golden Hamster ACE2 (Local Refinement), PDB code: 8ka8:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of Sars-Cov-2 Delta Rbd in Complex with Golden Hamster ACE2 (Local Refinement)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Sars-Cov-2 Delta Rbd in Complex with Golden Hamster ACE2 (Local Refinement) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn701 b:82.4 occ:1.00 CE1 A:HIS374 1.2 64.5 1.0 NE2 A:HIS378 2.1 62.9 1.0 OE2 A:GLU402 2.1 63.6 1.0 NE2 A:HIS374 2.1 64.5 1.0 OE1 A:GLU402 2.1 63.6 1.0 CD A:GLU402 2.3 63.6 1.0 ND1 A:HIS374 2.3 64.5 1.0 CD2 A:HIS378 2.9 62.9 1.0 CE1 A:HIS378 3.2 62.9 1.0 CD2 A:HIS374 3.3 64.5 1.0 CG A:HIS374 3.4 64.5 1.0 CG A:GLU402 3.7 63.6 1.0 CG A:HIS378 4.1 62.9 1.0 ND1 A:HIS378 4.2 62.9 1.0 OE2 A:GLU375 4.4 64.7 1.0 CB A:GLU402 4.5 63.6 1.0 CA A:GLU402 4.6 63.6 1.0 CB A:HIS374 4.8 64.5 1.0 O A:HIS374 5.0 64.5 1.0

S.Niu, Z.N.Zhao, Y.Chai, G.F.Gao. Cryo-Em Structure of Sars-Cov-2 Delta Rbd in Complex with Golden Hamster ACE2 (Local Refinement) To Be Published.
DOI: 10.1128/JVI.01157-23