Zinc in PDB 8k3f: Crystal Structure of the Recombination Mediator Protein Recr From Campylobacter Jejuni

The structure of Crystal Structure of the Recombination Mediator Protein Recr From Campylobacter Jejuni, PDB code: 8k3f was solved by S.J.Lee, S.I.Yoon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.18 / 2.60
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	231.427, 64.186, 74.621, 90, 100.6, 90
R / Rfree (%)	20.7 / 24.6

The binding sites of Zinc atom in the Crystal Structure of the Recombination Mediator Protein Recr From Campylobacter Jejuni (pdb code 8k3f). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of the Recombination Mediator Protein Recr From Campylobacter Jejuni, PDB code: 8k3f:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Crystal Structure of the Recombination Mediator Protein Recr From Campylobacter Jejuni


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Recombination Mediator Protein Recr From Campylobacter Jejuni within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:57.1 occ:1.00 SG A:CYS70 2.3 53.5 1.0 SG A:CYS58 2.3 55.5 1.0 SG A:CYS61 2.3 49.8 1.0 SG A:CYS73 2.4 55.1 1.0 CB A:CYS58 3.2 51.6 1.0 CB A:CYS73 3.3 58.8 1.0 CB A:CYS61 3.4 48.2 1.0 CB A:CYS70 3.4 55.2 1.0 N A:CYS70 3.9 62.6 1.0 N A:CYS61 3.9 58.5 1.0 N A:CYS73 4.2 57.6 1.0 CA A:CYS70 4.2 58.9 1.0 CA A:CYS61 4.2 51.9 1.0 CA A:CYS73 4.3 60.6 1.0 CB A:GLN60 4.5 55.6 1.0 CB A:ALA63 4.6 40.6 1.0 CA A:CYS58 4.7 51.4 1.0 N A:GLY62 4.8 45.0 1.0 C A:CYS70 4.9 60.9 1.0 N A:ALA63 4.9 42.5 1.0 C A:CYS61 4.9 48.5 1.0 C A:GLN60 4.9 59.6 1.0

Zinc binding site 2 out of 4 in the Crystal Structure of the Recombination Mediator Protein Recr From Campylobacter Jejuni


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Recombination Mediator Protein Recr From Campylobacter Jejuni within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn301 b:43.6 occ:1.00 SG B:CYS70 2.2 42.5 1.0 SG B:CYS73 2.3 42.2 1.0 SG B:CYS61 2.3 36.4 1.0 SG B:CYS58 2.3 45.0 1.0 CB B:CYS58 3.2 38.2 1.0 CB B:CYS73 3.3 40.4 1.0 CB B:CYS61 3.4 41.5 1.0 CB B:CYS70 3.4 37.3 1.0 N B:CYS61 3.9 44.9 1.0 N B:CYS70 3.9 45.8 1.0 N B:CYS73 4.2 38.6 1.0 CA B:CYS61 4.2 44.5 1.0 CA B:CYS70 4.2 39.3 1.0 CA B:CYS73 4.3 39.7 1.0 CB B:ALA63 4.5 26.9 1.0 CB B:GLN60 4.6 42.8 1.0 CA B:CYS58 4.7 37.7 1.0 N B:GLY62 4.8 38.4 1.0 N B:ALA63 4.8 35.8 1.0 C B:CYS70 4.8 40.8 1.0 C B:CYS61 4.9 40.7 1.0 C B:GLN60 4.9 48.0 1.0 O B:CYS70 4.9 42.7 1.0

Zinc binding site 3 out of 4 in the Crystal Structure of the Recombination Mediator Protein Recr From Campylobacter Jejuni


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of the Recombination Mediator Protein Recr From Campylobacter Jejuni within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn301 b:62.1 occ:1.00 SG C:CYS61 2.4 69.2 1.0 SG C:CYS73 2.4 67.6 1.0 SG C:CYS70 2.4 68.7 1.0 SG C:CYS58 2.5 80.6 1.0 CB C:CYS73 3.4 67.2 1.0 CB C:CYS58 3.4 74.1 1.0 CB C:CYS70 3.5 58.3 1.0 CB C:CYS61 3.5 69.1 1.0 N C:CYS70 3.8 70.1 1.0 N C:CYS61 3.8 61.6 1.0 CA C:CYS70 4.2 62.2 1.0 CA C:CYS61 4.2 65.5 1.0 N C:CYS73 4.3 64.8 1.0 CA C:CYS73 4.4 66.0 1.0 CB C:GLN60 4.5 66.0 1.0 CB C:ALA63 4.7 51.5 1.0 N C:GLY62 4.8 65.3 1.0 C C:GLN60 4.8 66.7 1.0 CA C:CYS58 4.9 72.7 1.0 C C:LEU69 4.9 71.9 1.0 N C:GLN60 4.9 67.8 1.0 C C:CYS61 4.9 66.8 1.0 N C:ALA63 4.9 54.0 1.0 C C:CYS70 5.0 63.8 1.0 CA C:GLN60 5.0 67.1 1.0

Zinc binding site 4 out of 4 in the Crystal Structure of the Recombination Mediator Protein Recr From Campylobacter Jejuni


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of the Recombination Mediator Protein Recr From Campylobacter Jejuni within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn301 b:62.0 occ:1.00 SG D:CYS61 2.3 57.9 1.0 SG D:CYS70 2.4 51.6 1.0 SG D:CYS58 2.4 65.1 1.0 SG D:CYS73 2.5 66.7 1.0 CB D:CYS58 3.3 62.0 1.0 CB D:CYS61 3.3 56.7 1.0 CB D:CYS73 3.5 66.3 1.0 CB D:CYS70 3.6 53.7 1.0 N D:CYS61 3.7 62.3 1.0 O D:HOH407 3.9 31.6 1.0 N D:CYS70 4.0 57.3 1.0 CA D:CYS61 4.1 59.5 1.0 N D:CYS73 4.3 65.5 1.0 CA D:CYS70 4.4 56.3 1.0 CB D:GLN60 4.4 69.3 1.0 CA D:CYS73 4.5 67.3 1.0 N D:GLY62 4.6 63.0 1.0 CB D:ALA63 4.6 61.6 1.0 CA D:CYS58 4.7 65.2 1.0 N D:ALA63 4.7 57.7 1.0 C D:GLN60 4.8 67.2 1.0 C D:CYS61 4.8 62.9 1.0 CA D:GLN60 5.0 69.7 1.0 N D:GLN60 5.0 69.9 1.0 C D:CYS70 5.0 59.8 1.0 O D:CYS70 5.0 60.7 1.0

S.J.Lee, S.Y.Ahn, H.B.Oh, S.Y.Kim, W.S.Song, S.I.Yoon. Structural and Biochemical Analysis of the Recombination Mediator Protein Recr From Campylobacter Jejuni. Int J Mol Sci V. 24 2023.
ISSN: ESSN 1422-0067
PubMed: 37629127
DOI: 10.3390/IJMS241612947