Zinc in PDB 8j49: Crystal Structure of La

The structure of Crystal Structure of La, PDB code: 8j49 was solved by C.Dong, X.Yan, X.Yuan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.44 / 1.66
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	30.159, 45.091, 52.947, 92.43, 101.86, 108.62
R / Rfree (%)	19.2 / 22

The binding sites of Zinc atom in the Crystal Structure of La (pdb code 8j49). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of La, PDB code: 8j49:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of La


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of La within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:25.1 occ:1.00 ND1 A:HIS88 2.1 19.9 1.0 SG A:CYS63 2.3 20.1 1.0 SG A:CYS85 2.3 18.2 1.0 SG A:CYS68 2.3 21.6 1.0 CE1 A:HIS88 3.0 21.8 1.0 CB A:CYS63 3.1 21.1 1.0 CG A:HIS88 3.2 19.4 1.0 CB A:CYS68 3.2 22.4 1.0 CB A:CYS85 3.4 19.6 1.0 CB A:HIS88 3.6 20.6 1.0 N A:CYS85 4.0 20.2 1.0 NE2 A:HIS88 4.1 23.9 1.0 CD2 A:HIS88 4.2 20.9 1.0 CA A:CYS85 4.3 21.0 1.0 CB A:VAL65 4.4 17.8 1.0 CG2 A:VAL65 4.4 18.0 1.0 CA A:CYS63 4.6 20.1 1.0 N A:HIS88 4.6 19.6 1.0 CA A:CYS68 4.7 21.6 1.0 CB A:VAL70 4.7 20.2 1.0 CA A:HIS88 4.7 19.0 1.0 O A:HOH354 4.8 29.2 1.0 CG2 A:VAL70 4.8 22.4 1.0 C A:CYS85 5.0 22.8 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of La


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of La within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:26.9 occ:1.00 NE2 A:HIS111 2.2 23.6 1.0 SG A:CYS123 2.3 25.9 1.0 SG A:CYS107 2.3 23.8 1.0 SG A:CYS104 2.3 19.3 1.0 CD2 A:HIS111 3.0 23.4 1.0 CB A:CYS104 3.2 20.7 1.0 CB A:CYS107 3.3 20.3 1.0 CE1 A:HIS111 3.3 28.3 1.0 CB A:CYS123 3.3 26.9 1.0 N A:CYS123 3.9 22.3 1.0 N A:CYS107 4.0 22.4 1.0 CA A:CYS123 4.2 25.8 1.0 CG A:HIS111 4.2 22.9 1.0 CA A:CYS107 4.3 19.6 1.0 ND1 A:HIS111 4.3 22.4 1.0 CA A:CYS104 4.7 18.3 1.0 CB A:GLN106 4.8 29.8 1.0 C A:GLN106 5.0 26.0 1.0

X.Yan, X.Yuan, J.Lv, B.Zhang, Y.Huang, Q.Li, J.Ma, Y.Li, X.Wang, Y.Li, Y.Yu, Q.Liu, T.Liu, W.Mi, C.Dong. Molecular Basis of SAP05-Mediated Ubiquitin-Independent Proteasomal Degradation of Transcription Factors Nat Commun V. 15 1170 2024.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-024-45521-7