Zinc in PDB 8ify: Cryo-Em Structure of Sars-Cov-2 Omicron Ba.4/5 Spike Protein in Complex with White-Tailed Deer ACE2

The binding sites of Zinc atom in the Cryo-Em Structure of Sars-Cov-2 Omicron Ba.4/5 Spike Protein in Complex with White-Tailed Deer ACE2 (pdb code 8ify). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Sars-Cov-2 Omicron Ba.4/5 Spike Protein in Complex with White-Tailed Deer ACE2, PDB code: 8ify:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Em Structure of Sars-Cov-2 Omicron Ba.4/5 Spike Protein in Complex with White-Tailed Deer ACE2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Sars-Cov-2 Omicron Ba.4/5 Spike Protein in Complex with White-Tailed Deer ACE2 within 5.0Å range:

Zinc binding site 2 out of 2 in the Cryo-Em Structure of Sars-Cov-2 Omicron Ba.4/5 Spike Protein in Complex with White-Tailed Deer ACE2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Sars-Cov-2 Omicron Ba.4/5 Spike Protein in Complex with White-Tailed Deer ACE2 within 5.0Å range: probe atom residue distance (Å) B Occ F:Zn706 b:0.0 occ:1.00 CZ2 F:TRP478 2.4 60.8 1.0 CD F:PRO500 2.7 52.8 1.0 CH2 F:TRP478 2.8 60.8 1.0 CB F:ASP499 3.1 53.3 1.0 CE2 F:TRP478 3.2 60.4 1.0 CG F:PRO500 3.4 53.2 1.0 N F:PRO500 3.7 53.4 1.0 CG F:ASP499 3.8 53.2 1.0 OD2 F:ASP499 3.8 53.1 1.0 CZ3 F:TRP478 3.8 61.1 1.0 NE1 F:TRP478 3.9 59.9 1.0 CA F:ASP499 4.0 53.8 1.0 N F:ASP499 4.1 52.6 1.0 C F:ASP499 4.2 53.5 1.0 CD2 F:TRP478 4.2 60.8 1.0 NE1 F:TRP477 4.3 55.5 1.0 CD1 F:TRP477 4.3 55.7 1.0 CB F:PRO500 4.4 52.5 1.0 CE3 F:TRP478 4.4 60.8 1.0 CA F:PRO500 4.7 53.2 1.0 OD1 F:ASP499 4.7 53.7 1.0

P.Han, Y.Meng, D.Zhang, Z.Xu, Z.Li, X.Pan, Z.Zhao, L.Li, L.Tang, J.Qi, K.Liu, G.F.Gao. Structural Basis of Sars-Cov-2 Binding to Ace 2 Receptor of White-Tailed Deer, Odocoileus Virginianus To Be Published.