Zinc in PDB 8ibz: Structure of R2 with 5'Orf and 3'Utr

The binding sites of Zinc atom in the Structure of R2 with 5'Orf and 3'Utr (pdb code 8ibz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of R2 with 5'Orf and 3'Utr, PDB code: 8ibz:

Zinc binding site 1 out of 1 in the Structure of R2 with 5'Orf and 3'Utr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of R2 with 5'Orf and 3'Utr within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn1201 b:38.2 occ:1.00 CE1 C:HIS946 1.5 14.0 1.0 NE2 C:HIS946 2.1 14.0 1.0 SG C:CYS938 2.3 27.8 1.0 SG C:CYS951 2.3 14.0 1.0 SG C:CYS934 2.3 19.8 1.0 ND1 C:HIS946 2.8 14.0 1.0 CB C:CYS934 3.2 19.8 1.0 CD2 C:HIS946 3.4 14.0 1.0 CB C:CYS938 3.5 27.8 1.0 CB C:CYS951 3.7 14.0 1.0 CG C:HIS946 3.7 14.0 1.0 CB C:ALA936 3.9 19.1 1.0 CA C:CYS951 4.3 14.0 1.0 CA C:CYS934 4.7 19.8 1.0 O C:GLN950 4.7 13.7 1.0 CA C:CYS938 4.8 27.8 1.0 CE1 C:PHE1102 4.8 14.0 1.0 N C:CYS938 4.8 27.8 1.0 N C:ALA936 4.8 19.1 1.0 CA C:ALA936 4.9 19.1 1.0

P.Deng, S.Q.Tan, Q.Y.Yang, L.Fu, Y.Wu, H.Z.Zhu, L.Sun, Z.Bao, Y.Lin, Q.C.Zhang, H.Wang, J.Wang, J.G.Liu. Structural Rna Components Supervise the Sequential Dna Cleavage in R2 Retrotransposon. Cell V. 186 2865 2023.
ISSN: ISSN 1097-4172
PubMed: 37301196
DOI: 10.1016/J.CELL.2023.05.032