Zinc in PDB 8i7j: Yeast 40S-EIF4B - Partially Open Conformation of the 40S Head

The structure of Yeast 40S-EIF4B - Partially Open Conformation of the 40S Head also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Zinc atom in the Yeast 40S-EIF4B - Partially Open Conformation of the 40S Head (pdb code 8i7j). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Yeast 40S-EIF4B - Partially Open Conformation of the 40S Head, PDB code: 8i7j:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Yeast 40S-EIF4B - Partially Open Conformation of the 40S Head


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Yeast 40S-EIF4B - Partially Open Conformation of the 40S Head within 5.0Å range: probe atom residue distance (Å) B Occ a:Zn500 b:95.6 occ:1.00 SG a:CYS74 2.3 57.9 1.0 SG a:CYS77 2.3 54.4 1.0 SG a:CYS26 2.3 76.6 1.0 SG a:CYS23 2.3 74.2 1.0 CB a:CYS23 3.2 74.2 1.0 OG a:SER76 3.2 44.0 1.0 CB a:CYS77 3.3 54.4 1.0 N a:CYS74 3.4 57.9 1.0 CB a:CYS26 3.4 76.6 1.0 CB a:CYS74 3.5 57.9 1.0 N a:CYS26 3.5 76.6 1.0 O a:CYS74 3.6 57.9 1.0 CA a:CYS74 3.8 57.9 1.0 N a:CYS77 3.8 54.4 1.0 CA a:CYS26 4.0 76.6 1.0 C a:CYS74 4.1 57.9 1.0 CA a:CYS77 4.2 54.4 1.0 C a:ASN25 4.4 82.6 1.0 CB a:ASN25 4.4 82.6 1.0 C a:TYR73 4.5 58.9 1.0 N a:ASN25 4.6 82.6 1.0 CB a:SER76 4.6 44.0 1.0 CA a:TYR73 4.6 58.9 1.0 CA a:CYS23 4.7 74.2 1.0 N a:SER27 4.7 72.0 1.0 C a:CYS26 4.7 76.6 1.0 CA a:ASN25 4.7 82.6 1.0 CB a:ARG28 4.8 62.5 1.0 N a:ARG28 4.8 62.5 1.0 C a:SER76 5.0 44.0 1.0

Zinc binding site 2 out of 3 in the Yeast 40S-EIF4B - Partially Open Conformation of the 40S Head


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Yeast 40S-EIF4B - Partially Open Conformation of the 40S Head within 5.0Å range: probe atom residue distance (Å) B Occ b:Zn101 b:121.0 occ:1.00 SG b:CYS59 2.3 98.3 1.0 CB b:CYS59 2.4 98.3 1.0 N b:CYS40 3.5 105.2 1.0 CA b:GLY39 3.7 105.5 1.0 CA b:CYS59 3.9 98.3 1.0 C b:GLY39 4.1 105.5 1.0 N b:CYS59 4.4 98.3 1.0 OG b:SER58 4.4 95.0 1.0 SG b:CYS40 4.4 105.2 1.0 CB b:CYS40 4.5 105.2 1.0 N b:GLY39 4.6 105.5 1.0 SG b:CYS37 4.6 101.0 1.0 CA b:CYS40 4.6 105.2 1.0 C b:CYS59 4.9 98.3 1.0

Zinc binding site 3 out of 3 in the Yeast 40S-EIF4B - Partially Open Conformation of the 40S Head


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Yeast 40S-EIF4B - Partially Open Conformation of the 40S Head within 5.0Å range: probe atom residue distance (Å) B Occ f:Zn201 b:146.1 occ:1.00 SG f:CYS124 2.3 137.9 1.0 CD f:LYS141 3.3 174.8 1.0 ND2 f:ASN123 3.3 146.3 1.0 CG f:ASN123 3.7 146.3 1.0 CG f:LYS141 3.7 174.8 1.0 CB f:LYS141 4.0 174.8 1.0 SG f:CYS142 4.1 171.8 1.0 CB f:CYS124 4.1 137.9 1.0 OD1 f:ASN123 4.2 146.3 1.0 CB f:ASN123 4.3 146.3 1.0 CE f:LYS141 4.5 174.8 1.0 N f:CYS142 4.8 171.8 1.0 C f:ASN123 5.0 146.3 1.0

A.Datey, T.Hussain. Yeast Eukaryotic Initiation Factor 4B Remodels the Mrna Entry Site on the Small Ribosomal Subunit To Be Published.