Atomistry » Zinc » PDB 8ho4-8i3f » 8i24
Atomistry »
  Zinc »
    PDB 8ho4-8i3f »
      8i24 »

Zinc in PDB 8i24: Clostridium Thermocellum Rna Polymerase Transcription Open Complex with SIGI6 and Its Promoter

Enzymatic activity of Clostridium Thermocellum Rna Polymerase Transcription Open Complex with SIGI6 and Its Promoter

All present enzymatic activity of Clostridium Thermocellum Rna Polymerase Transcription Open Complex with SIGI6 and Its Promoter:
2.7.7.6;

Other elements in 8i24:

The structure of Clostridium Thermocellum Rna Polymerase Transcription Open Complex with SIGI6 and Its Promoter also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Clostridium Thermocellum Rna Polymerase Transcription Open Complex with SIGI6 and Its Promoter (pdb code 8i24). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Clostridium Thermocellum Rna Polymerase Transcription Open Complex with SIGI6 and Its Promoter, PDB code: 8i24:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 8i24

Go back to Zinc Binding Sites List in 8i24
Zinc binding site 1 out of 2 in the Clostridium Thermocellum Rna Polymerase Transcription Open Complex with SIGI6 and Its Promoter


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Clostridium Thermocellum Rna Polymerase Transcription Open Complex with SIGI6 and Its Promoter within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1201

b:44.8
occ:1.00
SG D:CYS898 2.3 29.9 1.0
SG D:CYS891 2.3 31.9 1.0
SG D:CYS817 2.3 36.8 1.0
SG D:CYS901 2.3 29.6 1.0
CB D:CYS901 2.9 29.6 1.0
CB D:CYS891 3.5 31.9 1.0
CB D:CYS898 3.6 29.9 1.0
CB D:CYS817 3.7 36.8 1.0
NH2 D:ARG886 3.7 32.1 1.0
CA D:CYS891 4.0 31.9 1.0
CA D:CYS901 4.1 29.6 1.0
N D:CYS901 4.1 29.6 1.0
N D:CYS898 4.3 29.9 1.0
OG1 D:THR819 4.5 38.1 1.0
CA D:CYS898 4.5 29.9 1.0
N D:CYS817 4.5 36.8 1.0
CA D:CYS817 4.7 36.8 1.0
CZ D:ARG886 4.8 32.1 1.0
N D:HIS892 4.8 33.9 1.0
C D:CYS891 4.8 31.9 1.0
CG2 D:THR819 4.8 38.1 1.0
NE D:ARG886 4.8 32.1 1.0
CB D:SER893 4.9 34.2 1.0

Zinc binding site 2 out of 2 in 8i24

Go back to Zinc Binding Sites List in 8i24
Zinc binding site 2 out of 2 in the Clostridium Thermocellum Rna Polymerase Transcription Open Complex with SIGI6 and Its Promoter


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Clostridium Thermocellum Rna Polymerase Transcription Open Complex with SIGI6 and Its Promoter within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1202

b:111.4
occ:1.00
SG D:CYS101 2.3 62.7 1.0
SG D:CYS83 2.3 65.7 1.0
SG D:CYS98 2.3 67.7 1.0
SG D:CYS85 2.3 67.1 1.0
CB D:CYS98 3.1 67.7 1.0
CB D:CYS85 3.5 67.1 1.0
N D:CYS85 3.6 67.1 1.0
CB D:CYS101 3.7 62.7 1.0
CA D:CYS85 4.1 67.1 1.0
CB D:CYS83 4.1 65.7 1.0
CB D:LYS87 4.1 68.4 1.0
N D:CYS101 4.3 62.7 1.0
N D:HIS84 4.4 60.2 1.0
CA D:CYS101 4.6 62.7 1.0
CA D:CYS98 4.6 67.7 1.0
N D:LYS87 4.6 68.4 1.0
C D:CYS85 4.6 67.1 1.0
C D:HIS84 4.7 60.2 1.0
N D:GLY86 4.8 68.4 1.0
CG2 D:VAL103 5.0 53.4 1.0
CA D:HIS84 5.0 60.2 1.0
C D:CYS83 5.0 65.7 1.0

Reference:

J.Li, H.Zhang, D.Li, Y.J.Liu, E.A.Bayer, Q.Cui, Y.Feng, P.Zhu. Structure of the Transcription Open Complex of Distinct Sigmai Factors Nat Commun 2023.
ISSN: ESSN 2041-1723
Page generated: Thu Oct 31 07:37:22 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy