Zinc in PDB 8hmc: Base Module State 1 of Tetrahymena Ift-A

The binding sites of Zinc atom in the Base Module State 1 of Tetrahymena Ift-A (pdb code 8hmc). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Base Module State 1 of Tetrahymena Ift-A, PDB code: 8hmc:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Base Module State 1 of Tetrahymena Ift-A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Base Module State 1 of Tetrahymena Ift-A within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn2001 b:184.0 occ:1.00 SG B:CYS1111 2.3 136.4 1.0 SG B:CYS1116 3.1 130.0 1.0 SG B:CYS1127 3.3 115.6 1.0 CB B:CYS1111 3.4 136.4 1.0 SG B:CYS1130 3.5 117.6 1.0 CB B:CYS1130 4.0 117.6 1.0 CG2 B:VAL1120 4.2 124.8 1.0 N B:LYS1114 4.3 126.9 1.0 CB B:LYS1114 4.4 126.9 1.0 O B:GLN1118 4.8 129.5 1.0 CA B:CYS1111 4.8 136.4 1.0 CB B:CYS1116 4.8 130.0 1.0 CA B:LYS1114 4.8 126.9 1.0 N B:GLY1113 4.9 131.4 1.0

Zinc binding site 2 out of 2 in the Base Module State 1 of Tetrahymena Ift-A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Base Module State 1 of Tetrahymena Ift-A within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn2002 b:164.3 occ:1.00 SG B:CYS1152 2.3 133.6 1.0 SG B:CYS1155 2.3 122.5 1.0 SG B:CYS1175 2.3 120.9 1.0 SG B:CYS1172 2.3 123.1 1.0 CB B:CYS1155 3.2 122.5 1.0 CB B:CYS1172 3.3 123.1 1.0 N B:CYS1155 3.8 122.5 1.0 CB B:CYS1175 3.9 120.9 1.0 CB B:CYS1152 3.9 133.6 1.0 CA B:CYS1155 4.0 122.5 1.0 N B:CYS1175 4.3 120.9 1.0 C B:CYS1155 4.5 122.5 1.0 N B:ARG1156 4.6 116.8 1.0 OG B:SER1177 4.6 136.2 1.0 CA B:CYS1175 4.6 120.9 1.0 CA B:CYS1172 4.8 123.1 1.0 CB B:SER1177 4.8 136.2 1.0 C B:ASN1154 4.8 128.2 1.0 N B:CYS1152 5.0 133.6 1.0 CB B:ASN1154 5.0 128.2 1.0 CA B:CYS1152 5.0 133.6 1.0

Y.Ma, J.He, S.Li, D.Yao, C.Huang, J.Wu, M.Lei. Structural Insight Into the Intraflagellar Transport Complex Ift-A and Its Assembly in the Anterograde Ift Train. Nat Commun V. 14 1506 2023.
ISSN: ESSN 2041-1723
PubMed: 36932088
DOI: 10.1038/S41467-023-37208-2