Zinc in PDB 8hke: Dsrna Transporter
Zinc Binding Sites:
The binding sites of Zinc atom in the Dsrna Transporter
(pdb code 8hke). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
Dsrna Transporter, PDB code: 8hke:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 8hke
Go back to
Zinc Binding Sites List in 8hke
Zinc binding site 1 out
of 2 in the Dsrna Transporter
![](/pictures/ZN/pdb/hk/8hke-ZN-sphere_01.jpg) Mono view
![](/pictures/ZN/pdb/hk/8hke-ZN-sphere_01_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Dsrna Transporter within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn801
b:105.5
occ:1.00
|
OD2
|
B:ASP551
|
2.1
|
72.0
|
1.0
|
NE2
|
B:HIS540
|
2.1
|
69.0
|
1.0
|
NE2
|
B:HIS744
|
2.2
|
73.3
|
1.0
|
CE1
|
B:HIS744
|
2.2
|
73.3
|
1.0
|
NE2
|
B:HIS740
|
2.3
|
76.5
|
1.0
|
CD2
|
B:HIS540
|
2.6
|
69.0
|
1.0
|
CG
|
B:ASP551
|
2.8
|
72.0
|
1.0
|
OD1
|
B:ASP551
|
2.8
|
72.0
|
1.0
|
CD2
|
B:HIS740
|
3.2
|
76.5
|
1.0
|
CE1
|
B:HIS540
|
3.3
|
69.0
|
1.0
|
CE1
|
B:HIS740
|
3.4
|
76.5
|
1.0
|
CD2
|
B:HIS744
|
3.4
|
73.3
|
1.0
|
ND1
|
B:HIS744
|
3.4
|
73.3
|
1.0
|
OG
|
B:SER536
|
3.7
|
59.0
|
1.0
|
CG
|
B:HIS540
|
3.9
|
69.0
|
1.0
|
CG
|
B:HIS744
|
4.0
|
73.3
|
1.0
|
ND1
|
B:HIS540
|
4.2
|
69.0
|
1.0
|
CB
|
B:ASP551
|
4.3
|
72.0
|
1.0
|
CD2
|
B:TYR539
|
4.4
|
64.1
|
1.0
|
CG
|
B:HIS740
|
4.4
|
76.5
|
1.0
|
ND1
|
B:HIS740
|
4.5
|
76.5
|
1.0
|
CE2
|
B:TYR539
|
4.5
|
64.1
|
1.0
|
CD1
|
B:TRP743
|
4.7
|
75.5
|
1.0
|
CB
|
B:SER536
|
4.8
|
59.0
|
1.0
|
NE1
|
B:TRP743
|
4.9
|
75.5
|
1.0
|
|
Zinc binding site 2 out
of 2 in 8hke
Go back to
Zinc Binding Sites List in 8hke
Zinc binding site 2 out
of 2 in the Dsrna Transporter
![](/pictures/ZN/pdb/hk/8hke-ZN-sphere_02.jpg) Mono view
![](/pictures/ZN/pdb/hk/8hke-ZN-sphere_02_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Dsrna Transporter within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn801
b:115.6
occ:1.00
|
NE2
|
A:HIS540
|
2.1
|
71.3
|
1.0
|
NE2
|
A:HIS740
|
2.2
|
77.8
|
1.0
|
NE2
|
A:HIS744
|
2.3
|
73.5
|
1.0
|
OD1
|
A:ASP551
|
2.5
|
78.4
|
1.0
|
OD2
|
A:ASP551
|
2.6
|
78.4
|
1.0
|
CE1
|
A:HIS744
|
2.7
|
73.5
|
1.0
|
CD2
|
A:HIS540
|
2.7
|
71.3
|
1.0
|
CG
|
A:ASP551
|
2.8
|
78.4
|
1.0
|
CE1
|
A:HIS740
|
2.9
|
77.8
|
1.0
|
CE1
|
A:HIS540
|
3.2
|
71.3
|
1.0
|
CD2
|
A:HIS740
|
3.3
|
77.8
|
1.0
|
CD2
|
A:HIS744
|
3.4
|
73.5
|
1.0
|
OG
|
A:SER536
|
3.5
|
65.0
|
1.0
|
ND1
|
A:HIS744
|
3.8
|
73.5
|
1.0
|
CG
|
A:HIS540
|
3.9
|
71.3
|
1.0
|
ND1
|
A:HIS540
|
4.1
|
71.3
|
1.0
|
ND1
|
A:HIS740
|
4.1
|
77.8
|
1.0
|
CB
|
A:ASP551
|
4.2
|
78.4
|
1.0
|
CG
|
A:HIS744
|
4.2
|
73.5
|
1.0
|
CG
|
A:HIS740
|
4.3
|
77.8
|
1.0
|
CE2
|
A:TYR539
|
4.3
|
69.3
|
1.0
|
CD2
|
A:TYR539
|
4.4
|
69.3
|
1.0
|
CB
|
A:SER536
|
4.4
|
65.0
|
1.0
|
NE1
|
A:TRP743
|
4.8
|
73.8
|
1.0
|
CD1
|
A:TRP743
|
4.9
|
73.8
|
1.0
|
O
|
A:SER536
|
4.9
|
65.0
|
1.0
|
CA
|
A:SER536
|
4.9
|
65.0
|
1.0
|
|
Reference:
D.H.Jiang,
J.T.Zhang.
Dsrna Transporter To Be Published.
Page generated: Thu Dec 28 13:11:40 2023
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