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Zinc in PDB 8hip: Dsrna Transporter

Zinc Binding Sites:

The binding sites of Zinc atom in the Dsrna Transporter (pdb code 8hip). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Dsrna Transporter, PDB code: 8hip:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 8hip

Go back to Zinc Binding Sites List in 8hip
Zinc binding site 1 out of 2 in the Dsrna Transporter


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Dsrna Transporter within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn803

b:30.0
occ:1.00
NE2 B:HIS540 2.2 23.6 1.0
NE2 B:HIS740 2.2 22.1 1.0
NE2 B:HIS744 2.2 20.9 1.0
OD2 B:ASP551 2.5 30.4 1.0
OD1 B:ASP551 2.6 30.4 1.0
CG B:ASP551 2.9 30.4 1.0
CE1 B:HIS540 3.1 23.6 1.0
CE1 B:HIS744 3.1 20.9 1.0
CE1 B:HIS740 3.2 22.1 1.0
CD2 B:HIS740 3.2 22.1 1.0
CD2 B:HIS540 3.3 23.6 1.0
CD2 B:HIS744 3.3 20.9 1.0
ND1 B:HIS540 4.2 23.6 1.0
CB B:SER536 4.2 22.5 1.0
ND1 B:HIS744 4.3 20.9 1.0
ND1 B:HIS740 4.3 22.1 1.0
CG B:HIS740 4.3 22.1 1.0
OG B:SER536 4.3 22.5 1.0
CG B:HIS540 4.3 23.6 1.0
CG B:HIS744 4.4 20.9 1.0
CB B:ASP551 4.4 30.4 1.0
NE1 B:TRP743 4.6 22.4 1.0
CD1 B:TRP743 4.6 22.4 1.0
CD1 B:TYR539 4.7 26.5 1.0
O B:SER536 4.9 22.5 1.0
CA B:SER536 5.0 22.5 1.0

Zinc binding site 2 out of 2 in 8hip

Go back to Zinc Binding Sites List in 8hip
Zinc binding site 2 out of 2 in the Dsrna Transporter


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Dsrna Transporter within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn803

b:30.0
occ:1.00
NE2 A:HIS540 2.2 23.6 1.0
NE2 A:HIS740 2.2 22.1 1.0
NE2 A:HIS744 2.2 20.9 1.0
OD2 A:ASP551 2.5 30.4 1.0
OD1 A:ASP551 2.6 30.4 1.0
CG A:ASP551 2.9 30.4 1.0
CE1 A:HIS540 3.1 23.6 1.0
CE1 A:HIS744 3.1 20.9 1.0
CE1 A:HIS740 3.2 22.1 1.0
CD2 A:HIS740 3.2 22.1 1.0
CD2 A:HIS540 3.3 23.6 1.0
CD2 A:HIS744 3.3 20.9 1.0
ND1 A:HIS540 4.2 23.6 1.0
CB A:SER536 4.2 22.5 1.0
ND1 A:HIS744 4.3 20.9 1.0
ND1 A:HIS740 4.3 22.1 1.0
CG A:HIS740 4.3 22.1 1.0
OG A:SER536 4.3 22.5 1.0
CG A:HIS540 4.3 23.6 1.0
CG A:HIS744 4.4 20.9 1.0
CB A:ASP551 4.4 30.4 1.0
NE1 A:TRP743 4.6 22.4 1.0
CD1 A:TRP743 4.6 22.4 1.0
CD1 A:TYR539 4.7 26.5 1.0
O A:SER536 4.9 22.5 1.0
CA A:SER536 5.0 22.5 1.0

Reference:

D.H.Jiang, J.T.Zhang. Structure of Dsrna Transporter at 2.77 Angstroms Resolution. To Be Published.
Page generated: Thu Dec 28 13:11:38 2023

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