Zinc in PDB 8hf3: Cryo-Em Structure of Human ZDHHC9/GCP16 Complex

All present enzymatic activity of Cryo-Em Structure of Human ZDHHC9/GCP16 Complex:
2.3.1.225;

The binding sites of Zinc atom in the Cryo-Em Structure of Human ZDHHC9/GCP16 Complex (pdb code 8hf3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Human ZDHHC9/GCP16 Complex, PDB code: 8hf3:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Em Structure of Human ZDHHC9/GCP16 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Human ZDHHC9/GCP16 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:140.9 occ:1.00 SG A:CYS141 2.3 68.6 1.0 SG A:CYS144 2.4 71.5 1.0 SG A:CYS161 2.4 40.4 1.0 CB A:CYS144 2.7 71.5 1.0 ND1 A:HIS154 3.0 54.8 1.0 CB A:CYS141 3.2 68.6 1.0 CE1 A:HIS154 3.2 54.8 1.0 N A:CYS144 3.4 71.5 1.0 CB A:CYS161 3.6 40.4 1.0 CA A:CYS144 3.6 71.5 1.0 CG A:HIS154 4.3 54.8 1.0 N A:CYS161 4.4 40.4 1.0 CA A:CYS161 4.4 40.4 1.0 NE2 A:HIS154 4.6 54.8 1.0 CA A:CYS141 4.6 68.6 1.0 C A:THR143 4.6 73.9 1.0 CB A:THR143 4.7 73.9 1.0 C A:CYS144 4.8 71.5 1.0 O A:CYS141 4.9 68.6 1.0 C A:CYS141 4.9 68.6 1.0 CB A:HIS154 5.0 54.8 1.0

Zinc binding site 2 out of 2 in the Cryo-Em Structure of Human ZDHHC9/GCP16 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Human ZDHHC9/GCP16 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn402 b:126.2 occ:1.00 ND1 A:HIS168 2.1 40.9 1.0 SG A:CYS175 2.3 29.2 1.0 SG A:CYS158 2.3 54.9 1.0 SG A:CYS155 2.4 47.7 1.0 CE1 A:HIS168 2.5 40.9 1.0 CB A:CYS158 2.5 54.9 1.0 N A:CYS158 3.3 54.9 1.0 CG A:HIS168 3.4 40.9 1.0 CA A:CYS158 3.5 54.9 1.0 CB A:CYS155 3.5 47.7 1.0 NE2 A:HIS168 3.8 40.9 1.0 CB A:CYS175 4.0 29.2 1.0 CB A:HIS168 4.1 40.9 1.0 CD2 A:HIS168 4.2 40.9 1.0 C A:ILE157 4.4 54.4 1.0 CB A:ILE157 4.5 54.4 1.0 CA A:CYS175 4.7 29.2 1.0 N A:CYS175 4.7 29.2 1.0 CG2 A:ILE157 4.7 54.4 1.0 C A:CYS158 4.7 54.9 1.0 CA A:CYS155 4.9 47.7 1.0 CA A:ILE157 4.9 54.4 1.0 OD1 A:ASN160 4.9 45.4 1.0

J.Wu, Q.Hu, Y.Zhang, S.Liu, A.Yang. Cryo-Em Structure of Human ZDHHC9/GCP16 Complex To Be Published.