Zinc in PDB 8h3q: Cryo-Em Structure of the CAND1-CUL3-RBX1 Complex

Enzymatic activity of Cryo-Em Structure of the CAND1-CUL3-RBX1 Complex

All present enzymatic activity of Cryo-Em Structure of the CAND1-CUL3-RBX1 Complex:
2.3.2.27; 2.3.2.32;

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of the CAND1-CUL3-RBX1 Complex (pdb code 8h3q). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Cryo-Em Structure of the CAND1-CUL3-RBX1 Complex, PDB code: 8h3q:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 8h3q

Go back to Zinc Binding Sites List in 8h3q
Zinc binding site 1 out of 3 in the Cryo-Em Structure of the CAND1-CUL3-RBX1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of the CAND1-CUL3-RBX1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn4001

b:104.2
occ:1.00
 ND1 E:HIS80 2.1 112.2 1.0
SG E:CYS45 2.3 137.7 1.0
SG E:CYS42 2.3 136.0 1.0
SG E:CYS83 2.3 118.1 1.0
CE1 E:HIS80 2.7 112.3 1.0
CB E:CYS45 3.0 137.7 1.0
CB E:CYS42 3.0 136.2 1.0
CG E:HIS80 3.3 112.4 1.0
N E:CYS45 3.6 137.4 1.0
CB E:CYS83 3.7 117.6 1.0
CA E:CYS45 3.8 137.8 1.0
CB E:CYS53 3.9 143.4 1.0
NE2 E:HIS80 3.9 112.3 1.0
CB E:HIS80 3.9 112.5 1.0
CD2 E:HIS80 4.2 112.3 1.0
CA E:CYS53 4.5 143.5 1.0
CA E:CYS42 4.5 136.3 1.0
N E:HIS80 4.5 112.2 1.0
C E:CYS45 4.5 138.1 1.0
N E:ARG46 4.6 138.5 1.0
C E:ILE44 4.7 137.0 1.0
CA E:HIS80 4.9 112.5 1.0
CB E:ILE44 4.9 136.6 1.0
N E:ILE44 4.9 136.5 1.0
O E:HIS48 4.9 141.4 1.0

Zinc binding site 2 out of 3 in 8h3q

Go back to Zinc Binding Sites List in 8h3q
Zinc binding site 2 out of 3 in the Cryo-Em Structure of the CAND1-CUL3-RBX1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of the CAND1-CUL3-RBX1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn4002

b:92.5
occ:1.00
 OD2 E:ASP97 2.0 131.3 1.0
ND1 E:HIS77 2.3 113.1 1.0
SG E:CYS75 2.3 115.9 1.0
SG E:CYS94 2.3 129.2 1.0
CB E:CYS75 2.4 116.0 1.0
CE1 E:HIS77 2.5 113.2 1.0
CG E:ASP97 2.9 131.3 1.0
CG E:HIS77 3.2 112.9 1.0
NE2 E:HIS77 3.4 113.1 1.0
OD1 E:ASP97 3.4 131.1 1.0
CB E:CYS94 3.5 130.0 1.0
CD2 E:HIS77 3.8 113.0 1.0
CB E:ASP97 3.9 131.3 1.0
CA E:CYS75 3.9 116.0 1.0
CB E:HIS77 4.0 112.9 1.0
O E:CYS75 4.3 115.6 1.0
C E:CYS75 4.4 115.6 1.0
O E:CYS94 4.5 130.2 1.0
CB E:ARG99 4.7 132.2 1.0
N E:ASP97 4.7 131.1 1.0
N E:CYS75 4.8 116.6 1.0
CG E:ARG99 4.8 132.8 1.0
CA E:CYS94 4.8 130.1 1.0
CA E:ASP97 4.9 131.3 1.0
N E:HIS77 4.9 113.4 1.0
CE3 E:TRP101 5.0 129.1 1.0

Zinc binding site 3 out of 3 in 8h3q

Go back to Zinc Binding Sites List in 8h3q
Zinc binding site 3 out of 3 in the Cryo-Em Structure of the CAND1-CUL3-RBX1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryo-Em Structure of the CAND1-CUL3-RBX1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn4003

b:104.9
occ:1.00
 ND1 E:HIS82 2.1 115.0 1.0
SG E:CYS56 2.3 146.0 1.0
SG E:CYS68 2.3 133.8 1.0
SG E:CYS53 2.3 143.1 1.0
CG E:HIS82 2.6 115.1 1.0
CB E:HIS82 2.9 115.4 1.0
CE1 E:HIS82 3.0 114.9 1.0
CB E:CYS56 3.5 146.0 1.0
CB E:CYS68 3.6 134.2 1.0
CD2 E:HIS82 3.6 114.8 1.0
NE2 E:HIS82 3.8 114.7 1.0
CB E:CYS53 4.0 143.4 1.0
N E:CYS56 4.3 145.7 1.0
CA E:HIS82 4.3 115.5 1.0
N E:CYS53 4.4 143.3 1.0
CA E:CYS56 4.5 146.0 1.0
CD1 E:LEU52 4.5 143.2 1.0
C E:GLU55 4.6 145.4 1.0
N E:HIS82 4.6 114.8 1.0
CB E:GLU55 4.7 145.1 1.0
CA E:CYS53 4.8 143.5 1.0
CA E:CYS68 4.9 134.1 1.0
O E:GLU55 4.9 145.5 1.0

Reference:

Y.Hu, Q.Mao, Z.Chen, L.Sun. Cryo-Em Structure of the CAND1-CUL3-RBX1 Complex To Be Published.
Page generated: Thu Oct 31 07:03:29 2024

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