Zinc in PDB 8gn3: The Crystal Structure of ZBTB10 ZF1-2 in Complex with Telomeric Vairant Repeat Ttgggg

Protein crystallography data

The structure of The Crystal Structure of ZBTB10 ZF1-2 in Complex with Telomeric Vairant Repeat Ttgggg, PDB code: 8gn3 was solved by F.D.Li, S.M.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.08 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 36.119, 82.304, 82.389, 90, 90, 90
R / Rfree (%) 20 / 22.5

Zinc Binding Sites:

The binding sites of Zinc atom in the The Crystal Structure of ZBTB10 ZF1-2 in Complex with Telomeric Vairant Repeat Ttgggg (pdb code 8gn3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the The Crystal Structure of ZBTB10 ZF1-2 in Complex with Telomeric Vairant Repeat Ttgggg, PDB code: 8gn3:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 8gn3

Go back to Zinc Binding Sites List in 8gn3
Zinc binding site 1 out of 4 in the The Crystal Structure of ZBTB10 ZF1-2 in Complex with Telomeric Vairant Repeat Ttgggg


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of ZBTB10 ZF1-2 in Complex with Telomeric Vairant Repeat Ttgggg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn801

b:13.7
occ:1.00
 NE2 A:HIS740 2.1 10.9 1.0
SG A:CYS727 2.1 18.2 1.0
NE2 A:HIS744 2.1 10.3 1.0
SG A:CYS724 2.3 13.6 1.0
CD2 A:HIS744 3.0 12.7 1.0
CD2 A:HIS740 3.0 9.9 1.0
CB A:CYS724 3.1 12.3 1.0
CE1 A:HIS740 3.1 9.8 1.0
CE1 A:HIS744 3.2 14.3 1.0
CB A:CYS727 3.4 20.0 1.0
N A:CYS727 3.7 14.7 1.0
CA A:CYS727 4.1 15.8 1.0
CG A:HIS744 4.2 12.2 1.0
CG A:HIS740 4.2 9.4 1.0
ND1 A:HIS740 4.2 9.8 1.0
ND1 A:HIS744 4.2 10.6 1.0
C A:HIS726 4.3 17.2 1.0
CB A:TYR729 4.3 11.9 1.0
CB A:HIS726 4.5 14.7 1.0
CA A:CYS724 4.5 12.1 1.0
C A:CYS727 4.6 16.4 1.0
N A:HIS726 4.7 16.6 1.0
CA A:HIS726 4.7 17.7 1.0
O A:CYS727 4.7 18.8 1.0
O A:HIS726 5.0 22.4 1.0
N A:TYR729 5.0 14.7 1.0
CD1 A:ILE743 5.0 16.9 1.0

Zinc binding site 2 out of 4 in 8gn3

Go back to Zinc Binding Sites List in 8gn3
Zinc binding site 2 out of 4 in the The Crystal Structure of ZBTB10 ZF1-2 in Complex with Telomeric Vairant Repeat Ttgggg


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Crystal Structure of ZBTB10 ZF1-2 in Complex with Telomeric Vairant Repeat Ttgggg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn802

b:11.9
occ:1.00
 NE2 A:HIS772 2.0 13.3 1.0
NE2 A:HIS768 2.1 12.9 1.0
SG A:CYS755 2.3 11.9 1.0
SG A:CYS752 2.3 12.2 1.0
CD2 A:HIS772 2.9 17.6 1.0
CD2 A:HIS768 3.0 12.1 1.0
CE1 A:HIS772 3.1 14.3 1.0
CB A:CYS752 3.1 11.8 1.0
CE1 A:HIS768 3.2 14.4 1.0
CB A:CYS755 3.2 13.0 1.0
N A:CYS755 3.6 11.0 1.0
CA A:CYS755 4.0 12.6 1.0
CG A:HIS772 4.1 15.1 1.0
ND1 A:HIS772 4.2 15.8 1.0
CG A:HIS768 4.2 13.8 1.0
ND1 A:HIS768 4.2 14.8 1.0
CB A:ILE754 4.4 11.7 1.0
CA A:CYS752 4.6 11.4 1.0
C A:ILE754 4.6 12.5 1.0
O A:HOH956 4.7 29.6 1.0
C A:CYS755 4.7 13.2 1.0
CG2 A:ILE754 4.8 10.4 1.0
CA A:ILE754 4.9 11.3 1.0
N A:GLY756 4.9 9.9 1.0
N A:ILE754 4.9 11.2 1.0

Zinc binding site 3 out of 4 in 8gn3

Go back to Zinc Binding Sites List in 8gn3
Zinc binding site 3 out of 4 in the The Crystal Structure of ZBTB10 ZF1-2 in Complex with Telomeric Vairant Repeat Ttgggg


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Crystal Structure of ZBTB10 ZF1-2 in Complex with Telomeric Vairant Repeat Ttgggg within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn801

b:14.3
occ:1.00
 NE2 B:HIS740 2.1 11.7 1.0
NE2 B:HIS744 2.1 13.8 1.0
SG B:CYS727 2.2 15.8 1.0
SG B:CYS724 2.2 16.4 1.0
CD2 B:HIS740 2.9 13.3 1.0
CD2 B:HIS744 3.0 15.4 1.0
CB B:CYS724 3.1 17.3 1.0
CE1 B:HIS744 3.1 16.4 1.0
CE1 B:HIS740 3.1 12.2 1.0
CB B:CYS727 3.4 21.2 1.0
N B:CYS727 3.7 18.7 1.0
CA B:CYS727 4.0 20.1 1.0
CG B:HIS740 4.1 10.5 1.0
CB B:TYR729 4.1 13.9 1.0
ND1 B:HIS740 4.2 11.2 1.0
CG B:HIS744 4.2 15.2 1.0
ND1 B:HIS744 4.2 16.2 1.0
C B:HIS726 4.3 21.3 1.0
C B:CYS727 4.5 19.4 1.0
CB B:HIS726 4.5 18.8 1.0
CA B:CYS724 4.5 17.3 1.0
O B:CYS727 4.6 20.9 1.0
N B:HIS726 4.7 18.6 1.0
CA B:HIS726 4.7 16.5 1.0
N B:TYR729 4.9 15.8 1.0
CD1 B:ILE743 4.9 14.5 1.0
O B:HIS726 4.9 22.6 1.0
C B:CYS724 5.0 16.9 1.0

Zinc binding site 4 out of 4 in 8gn3

Go back to Zinc Binding Sites List in 8gn3
Zinc binding site 4 out of 4 in the The Crystal Structure of ZBTB10 ZF1-2 in Complex with Telomeric Vairant Repeat Ttgggg


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of The Crystal Structure of ZBTB10 ZF1-2 in Complex with Telomeric Vairant Repeat Ttgggg within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn802

b:11.1
occ:1.00
 NE2 B:HIS768 2.1 11.4 1.0
NE2 B:HIS772 2.1 12.7 1.0
SG B:CYS752 2.3 13.1 1.0
SG B:CYS755 2.3 9.8 1.0
CD2 B:HIS772 3.0 14.9 1.0
CD2 B:HIS768 3.0 10.8 1.0
CE1 B:HIS768 3.1 11.1 1.0
CB B:CYS752 3.2 11.8 1.0
CE1 B:HIS772 3.2 15.5 1.0
CB B:CYS755 3.3 11.3 1.0
N B:CYS755 3.6 11.3 1.0
CA B:CYS755 4.0 9.8 1.0
ND1 B:HIS768 4.2 10.7 1.0
CG B:HIS768 4.2 11.2 1.0
CG B:HIS772 4.2 13.8 1.0
ND1 B:HIS772 4.2 13.4 1.0
CB B:ILE754 4.5 14.6 1.0
CA B:CYS752 4.6 14.9 1.0
C B:ILE754 4.7 16.0 1.0
C B:CYS755 4.8 11.0 1.0
O B:HOH971 4.8 26.8 1.0
N B:GLY756 4.9 11.4 1.0
CG2 B:ILE754 4.9 16.5 1.0
CA B:ILE754 4.9 15.5 1.0
N B:ILE754 4.9 13.0 1.0

Reference:

F.D.Li, S.M.Wang. Structural Insights Into ZBTB10 Recognition of Telomeric Variant Repeat Ttgggg To Be Published.
Page generated: Wed Oct 30 20:58:38 2024

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