Zinc in PDB 8gao: Bacteriophage T4 Stalled Primosome with Mutant GP41-E227Q

The structure of Bacteriophage T4 Stalled Primosome with Mutant GP41-E227Q also contains other interesting chemical elements:

Magnesium

(Mg)

5 atoms

The binding sites of Zinc atom in the Bacteriophage T4 Stalled Primosome with Mutant GP41-E227Q (pdb code 8gao). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Bacteriophage T4 Stalled Primosome with Mutant GP41-E227Q, PDB code: 8gao:

Zinc binding site 1 out of 1 in the Bacteriophage T4 Stalled Primosome with Mutant GP41-E227Q


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Bacteriophage T4 Stalled Primosome with Mutant GP41-E227Q within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn401 b:253.2 occ:1.00 SG G:CYS65 2.3 220.0 1.0 SG G:CYS40 2.3 251.4 1.0 SG G:CYS37 2.3 234.3 1.0 SG G:CYS68 2.3 211.9 1.0 CB G:CYS37 2.7 234.3 1.0 CB G:CYS65 3.0 220.0 1.0 CB G:CYS40 3.2 251.4 1.0 CB G:CYS68 3.6 211.9 1.0 N G:CYS40 3.7 251.4 1.0 N G:CYS68 3.9 211.9 1.0 CA G:CYS40 4.1 251.4 1.0 CA G:CYS37 4.1 234.3 1.0 OD1 G:ASP42 4.3 245.8 1.0 CA G:CYS68 4.4 211.9 1.0 CB G:VAL39 4.4 241.5 1.0 CA G:CYS65 4.4 220.0 1.0 O G:CYS37 4.4 234.3 1.0 CB G:ASN67 4.5 221.4 1.0 C G:CYS37 4.5 234.3 1.0 C G:VAL39 4.6 241.5 1.0 N G:VAL39 4.8 241.5 1.0 C G:CYS65 4.8 220.0 1.0 CA G:VAL39 4.9 241.5 1.0 O G:CYS65 4.9 220.0 1.0 C G:ASN67 4.9 221.4 1.0 N G:CYS37 4.9 234.3 1.0 N G:GLY41 4.9 255.4 1.0 C G:CYS40 5.0 251.4 1.0 N G:ASN67 5.0 221.4 1.0

X.Feng, M.M.Spiering, R.De Luna Almeida Santos, S.J.Benkovic, H.Li. Structural Basis of the T4 Bacteriophage Primosome Assembly and Primer Synthesis. Biorxiv 2023.
ISSN: ISSN 2692-8205
PubMed: 37205424
DOI: 10.1101/2023.05.03.539249