Zinc in PDB 8g7v: Cryo-Em Structure of Rnp Inter

All present enzymatic activity of Cryo-Em Structure of Rnp Inter:
2.3.2.27; 3.6.4.13;

The binding sites of Zinc atom in the Cryo-Em Structure of Rnp Inter (pdb code 8g7v). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Rnp Inter, PDB code: 8g7v:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Em Structure of Rnp Inter


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Rnp Inter within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1001 b:108.4 occ:1.00 SG A:CYS869 2.4 47.2 1.0 SG A:CYS864 2.5 44.1 1.0 CB A:CYS813 2.7 44.4 1.0 CB A:CYS869 3.0 47.2 1.0 SG A:CYS810 3.6 38.0 1.0 CB A:CYS864 3.6 44.1 1.0 CG A:ARG866 3.6 49.1 1.0 CB A:CYS810 3.6 38.0 1.0 SG A:CYS813 3.7 44.4 1.0 N A:CYS813 3.8 44.4 1.0 CA A:CYS813 3.8 44.4 1.0 CB A:ARG866 4.3 49.1 1.0 CA A:CYS869 4.5 47.2 1.0 C A:CYS813 4.6 44.4 1.0 CZ2 A:TRP873 4.7 32.9 1.0 N A:LYS814 4.8 39.8 1.0 CB A:ALA815 4.8 43.3 1.0 CD A:ARG866 4.9 49.1 1.0 C A:LYS812 4.9 41.8 1.0 N A:ALA815 4.9 43.3 1.0

Zinc binding site 2 out of 2 in the Cryo-Em Structure of Rnp Inter


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Rnp Inter within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn1001 b:127.2 occ:1.00 SG C:CYS810 2.4 61.5 1.0 SG C:CYS864 2.4 60.8 1.0 SG C:CYS813 2.4 69.9 1.0 SG C:CYS869 2.5 66.0 1.0 CB C:CYS810 2.9 61.5 1.0 CB C:CYS864 3.2 60.8 1.0 CB C:CYS813 3.6 69.9 1.0 CB C:CYS869 3.6 66.0 1.0 N C:CYS813 4.1 69.9 1.0 NE1 C:TRP873 4.2 49.0 1.0 CZ2 C:TRP873 4.3 49.0 1.0 CA C:CYS810 4.4 61.5 1.0 CA C:CYS813 4.4 69.9 1.0 CG C:ARG866 4.6 63.0 1.0 CB C:HIS871 4.6 53.3 1.0 CE2 C:TRP873 4.6 49.0 1.0 CA C:CYS864 4.7 60.8 1.0 CB C:ARG866 4.9 63.0 1.0 N C:LYS814 4.9 64.9 1.0 C C:CYS813 5.0 69.9 1.0

W.Wang, A.M.Pyle. Cryo-Em Structure of Riplet:Rig-I:Dsrna Complex (End-Inter) To Be Published.