Zinc in PDB 8g6y: Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site 3-Aminopyridine-4-Carboxylic Acid Charged Nh-Trnaphe

The structure of Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site 3-Aminopyridine-4-Carboxylic Acid Charged Nh-Trnaphe also contains other interesting chemical elements:

Magnesium	(Mg)	231 atoms
Potassium	(K)	15 atoms

The binding sites of Zinc atom in the Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site 3-Aminopyridine-4-Carboxylic Acid Charged Nh-Trnaphe (pdb code 8g6y). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site 3-Aminopyridine-4-Carboxylic Acid Charged Nh-Trnaphe, PDB code: 8g6y:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site 3-Aminopyridine-4-Carboxylic Acid Charged Nh-Trnaphe


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site 3-Aminopyridine-4-Carboxylic Acid Charged Nh-Trnaphe within 5.0Å range: probe atom residue distance (Å) B Occ 3:Zn101 b:51.1 occ:1.00 ND1 3:HIS33 2.1 9.3 1.0 SG 3:CYS27 2.3 16.2 1.0 SG 3:CYS14 2.3 15.9 1.0 SG 3:CYS11 2.3 19.2 1.0 CG 3:HIS33 3.0 9.3 1.0 CE1 3:HIS33 3.1 9.3 1.0 CB 3:HIS33 3.3 9.3 1.0 CB 3:CYS27 3.3 16.2 1.0 CB 3:CYS11 3.6 19.2 1.0 CB 3:CYS14 3.7 15.9 1.0 N 3:CYS14 3.8 15.9 1.0 N 3:CYS11 3.9 19.2 1.0 CA 3:CYS14 4.0 15.9 1.0 CD2 3:HIS33 4.2 9.3 1.0 NE2 3:HIS33 4.2 9.3 1.0 CA 3:CYS11 4.2 19.2 1.0 C 3:ASN13 4.2 20.6 1.0 O 3:CYS11 4.5 19.2 1.0 CB 3:GLU30 4.5 12.3 1.0 C 3:LEU10 4.5 11.5 1.0 C 3:CYS11 4.5 19.2 1.0 CA 3:CYS27 4.6 16.2 1.0 O 3:ASN13 4.7 20.6 1.0 CB 3:ASN13 4.8 20.6 1.0 N 3:ASN13 4.8 20.6 1.0 CA 3:HIS33 4.8 9.3 1.0 CA 3:ASN13 4.8 20.6 1.0 N 3:GLU30 4.9 12.3 1.0 N 3:LEU10 4.9 11.5 1.0 O 3:GLU30 4.9 12.3 1.0 CB 3:LEU10 4.9 11.5 1.0

Zinc binding site 2 out of 2 in the Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site 3-Aminopyridine-4-Carboxylic Acid Charged Nh-Trnaphe


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site 3-Aminopyridine-4-Carboxylic Acid Charged Nh-Trnaphe within 5.0Å range: probe atom residue distance (Å) B Occ 4:Zn101 b:72.3 occ:1.00 SG 4:CYS40 2.3 42.8 1.0 SG 4:CYS37 2.3 43.2 1.0 SG 4:CYS16 2.3 39.3 1.0 SG 4:CYS18 2.3 40.0 1.0 CB 4:CYS40 2.4 42.8 1.0 CB 4:CYS37 2.7 43.2 1.0 N 4:CYS37 3.0 43.2 1.0 CB 4:CYS18 3.2 40.0 1.0 CA 4:CYS37 3.4 43.2 1.0 CB 4:CYS16 3.7 39.3 1.0 CA 4:CYS40 3.8 42.8 1.0 N 4:CYS18 3.8 40.0 1.0 C 4:VAL36 4.1 39.1 1.0 C 4:CYS37 4.1 43.2 1.0 CA 4:CYS18 4.2 40.0 1.0 N 4:CYS40 4.2 42.8 1.0 O 4:CYS37 4.2 43.2 1.0 CA 4:VAL36 4.4 39.1 1.0 N 4:SER17 4.5 37.9 1.0 CB 4:ASN20 4.6 38.7 1.0 C 4:CYS40 4.7 42.8 1.0 C 4:SER17 5.0 37.9 1.0 CA 4:CYS16 5.0 39.3 1.0

C.Majumdar, J.H.D.Cate. Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site 3-Aminopyridine-4-Carboxylic Acid Charged Nh-Trnaphe To Be Published.