Zinc in PDB 8g6x: Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe

The structure of Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe also contains other interesting chemical elements:

Magnesium	(Mg)	223 atoms
Potassium	(K)	7 atoms

The binding sites of Zinc atom in the Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe (pdb code 8g6x). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe, PDB code: 8g6x:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe within 5.0Å range: probe atom residue distance (Å) B Occ 3:Zn101 b:63.5 occ:1.00 ND1 3:HIS33 2.1 16.8 1.0 SG 3:CYS27 2.3 16.2 1.0 SG 3:CYS14 2.3 16.0 1.0 SG 3:CYS11 2.3 14.7 1.0 CG 3:HIS33 3.0 16.8 1.0 CE1 3:HIS33 3.1 16.8 1.0 CB 3:HIS33 3.2 16.8 1.0 CB 3:CYS27 3.4 16.2 1.0 CB 3:CYS11 3.6 14.7 1.0 CB 3:CYS14 3.7 16.0 1.0 N 3:CYS14 3.7 16.0 1.0 N 3:CYS11 3.9 14.7 1.0 CA 3:CYS14 4.0 16.0 1.0 CD2 3:HIS33 4.1 16.8 1.0 CB 3:GLU30 4.1 14.4 1.0 NE2 3:HIS33 4.2 16.8 1.0 CA 3:CYS11 4.2 14.7 1.0 C 3:ASN13 4.3 25.0 1.0 O 3:CYS11 4.5 14.7 1.0 C 3:CYS11 4.5 14.7 1.0 CB 3:LEU10 4.6 9.7 1.0 CA 3:CYS27 4.6 16.2 1.0 C 3:LEU10 4.6 9.7 1.0 N 3:ASN13 4.7 25.0 1.0 CA 3:HIS33 4.8 16.8 1.0 O 3:ASN13 4.8 25.0 1.0 CA 3:ASN13 4.9 25.0 1.0 CB 3:ASN13 4.9 25.0 1.0 O 3:GLU30 4.9 14.4 1.0 CG 3:GLU30 4.9 14.4 1.0 N 3:LEU10 4.9 9.7 1.0 CA 3:LEU10 5.0 9.7 1.0

Zinc binding site 2 out of 2 in the Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh- Trnaphe within 5.0Å range: probe atom residue distance (Å) B Occ 4:Zn101 b:120.6 occ:1.00 CB 4:CYS18 1.9 50.5 1.0 SG 4:CYS16 2.3 46.7 1.0 SG 4:CYS37 2.3 46.5 1.0 SG 4:CYS40 2.3 51.2 1.0 SG 4:CYS18 2.4 50.5 1.0 ND2 4:ASN20 3.2 42.0 1.0 CB 4:CYS40 3.2 51.2 1.0 CB 4:CYS37 3.3 46.5 1.0 CA 4:CYS18 3.4 50.5 1.0 CB 4:CYS16 3.8 46.7 1.0 N 4:CYS18 3.9 50.5 1.0 N 4:CYS40 3.9 51.2 1.0 N 4:CYS37 4.1 46.5 1.0 CA 4:CYS40 4.2 51.2 1.0 CB 4:LYS39 4.2 45.1 1.0 CA 4:CYS37 4.2 46.5 1.0 C 4:CYS18 4.3 50.5 1.0 C 4:LYS39 4.5 45.1 1.0 CG 4:ASN20 4.5 42.0 1.0 N 4:LYS39 4.6 45.1 1.0 C 4:VAL36 4.6 39.0 1.0 CA 4:LYS39 4.7 45.1 1.0 C 4:CYS37 4.8 46.5 1.0 N 4:GLY19 4.8 34.2 1.0 CA 4:VAL36 4.9 39.0 1.0

C.Majumdar, J.H.D.Cate. Structure of Wt E.Coli Ribosome 50S Subunit with Complexed with Mrna, P-Site Fmet-Nh-Trnafmet and A-Site Meta-Aminobenzoic Acid Charged Nh-Trnaphe To Be Published.