Zinc in PDB 8fr2: Carbonic Anhydrase IX-Mimic in Complex with the Alkyl Urea Compound 3H

Enzymatic activity of Carbonic Anhydrase IX-Mimic in Complex with the Alkyl Urea Compound 3H

All present enzymatic activity of Carbonic Anhydrase IX-Mimic in Complex with the Alkyl Urea Compound 3H:
4.2.1.1;

Protein crystallography data

The structure of Carbonic Anhydrase IX-Mimic in Complex with the Alkyl Urea Compound 3H, PDB code: 8fr2 was solved by J.C.Combs, R.Mckenna, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.90 / 1.31
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 41.879, 41.193, 71.976, 90, 103.84, 90
R / Rfree (%) 16.4 / 17.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Carbonic Anhydrase IX-Mimic in Complex with the Alkyl Urea Compound 3H (pdb code 8fr2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Carbonic Anhydrase IX-Mimic in Complex with the Alkyl Urea Compound 3H, PDB code: 8fr2:

Zinc binding site 1 out of 1 in 8fr2

Go back to Zinc Binding Sites List in 8fr2
Zinc binding site 1 out of 1 in the Carbonic Anhydrase IX-Mimic in Complex with the Alkyl Urea Compound 3H


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Carbonic Anhydrase IX-Mimic in Complex with the Alkyl Urea Compound 3H within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:8.7
occ:1.00
NAJ A:N8A302 1.9 7.9 1.0
NE2 A:HIS94 2.0 9.0 1.0
ND1 A:HIS119 2.0 8.5 1.0
NE2 A:HIS96 2.1 9.7 1.0
CE1 A:HIS119 2.9 7.0 1.0
OAH A:N8A302 3.0 9.1 1.0
CE1 A:HIS94 3.0 10.0 1.0
CD2 A:HIS96 3.0 7.8 1.0
SAG A:N8A302 3.0 9.8 1.0
CD2 A:HIS94 3.0 9.2 1.0
CE1 A:HIS96 3.1 10.0 1.0
CG A:HIS119 3.1 7.5 1.0
CB A:HIS119 3.6 8.0 1.0
O A:HOH564 3.7 12.7 1.0
OG1 A:THR199 3.8 8.5 1.0
OE1 A:GLU106 4.0 8.2 1.0
NE2 A:HIS119 4.1 8.6 1.0
ND1 A:HIS94 4.1 9.6 1.0
OAI A:N8A302 4.1 9.4 1.0
CG A:HIS94 4.2 9.9 1.0
ND1 A:HIS96 4.2 8.9 1.0
CG A:HIS96 4.2 7.5 1.0
CD2 A:HIS119 4.2 7.8 1.0
CAE A:N8A302 4.3 9.7 1.0
O A:HOH526 4.8 14.9 1.0
CAD A:N8A302 4.8 9.5 1.0
CD A:GLU106 4.9 8.1 1.0

Reference:

J.Combs, M.Bozdag, L.D.Cravey, A.Kota, R.Mckenna, A.Angeli, F.Carta, C.T.Supuran. New Insights Into Conformationally Restricted Carbonic Anhydrase Inhibitors. Molecules V. 28 2023.
ISSN: ESSN 1420-3049
PubMed: 36677947
DOI: 10.3390/MOLECULES28020890
Page generated: Sat Apr 8 08:57:04 2023

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