Zinc in PDB 8fn2: The Structure of A 50S Ribosomal Subunit in the Lyme Disease Pathogen Borreliella Burgdorferi

The binding sites of Zinc atom in the The Structure of A 50S Ribosomal Subunit in the Lyme Disease Pathogen Borreliella Burgdorferi (pdb code 8fn2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Structure of A 50S Ribosomal Subunit in the Lyme Disease Pathogen Borreliella Burgdorferi, PDB code: 8fn2:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the The Structure of A 50S Ribosomal Subunit in the Lyme Disease Pathogen Borreliella Burgdorferi


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of A 50S Ribosomal Subunit in the Lyme Disease Pathogen Borreliella Burgdorferi within 5.0Å range: probe atom residue distance (Å) B Occ d:Zn101 b:97.1 occ:1.00 SG d:CYS34 2.3 78.2 1.0 SG d:CYS44 2.3 67.6 1.0 SG d:CYS47 2.3 72.5 1.0 SG d:CYS31 2.3 66.4 1.0 CB d:CYS44 2.9 67.6 1.0 CB d:CYS31 3.1 66.4 1.0 CB d:CYS47 3.2 72.5 1.0 CB d:CYS34 3.7 78.2 1.0 N d:CYS47 3.9 72.5 1.0 N d:CYS34 4.0 78.2 1.0 CA d:CYS47 4.1 72.5 1.0 CA d:CYS44 4.4 67.6 1.0 CA d:CYS34 4.5 78.2 1.0 CA d:CYS31 4.6 66.4 1.0 CB d:ASN33 4.6 72.3 1.0 N d:GLY48 4.7 69.9 1.0 C d:CYS47 4.7 72.5 1.0 CB d:ASN36 4.9 64.1 1.0 O d:TYR49 4.9 70.0 1.0 N d:TYR49 4.9 70.0 1.0 C d:LYS46 5.0 67.8 1.0

Zinc binding site 2 out of 2 in the The Structure of A 50S Ribosomal Subunit in the Lyme Disease Pathogen Borreliella Burgdorferi


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Structure of A 50S Ribosomal Subunit in the Lyme Disease Pathogen Borreliella Burgdorferi within 5.0Å range: probe atom residue distance (Å) B Occ h:Zn101 b:112.4 occ:1.00 ND1 h:HIS32 2.1 72.0 1.0 SG h:CYS14 2.3 77.6 1.0 SG h:CYS11 2.3 72.0 1.0 SG h:CYS27 2.3 75.0 1.0 CE1 h:HIS32 3.0 72.0 1.0 CG h:HIS32 3.1 72.0 1.0 CB h:CYS27 3.3 75.0 1.0 CB h:HIS32 3.4 72.0 1.0 N h:CYS14 3.5 77.6 1.0 CB h:CYS14 3.6 77.6 1.0 CB h:CYS11 3.8 72.0 1.0 CA h:CYS14 3.8 77.6 1.0 N h:CYS11 4.1 72.0 1.0 NE2 h:HIS32 4.1 72.0 1.0 CD2 h:HIS32 4.2 72.0 1.0 C h:LYS13 4.2 78.5 1.0 CB h:ASN29 4.3 72.9 1.0 CA h:CYS11 4.4 72.0 1.0 O h:CYS11 4.5 72.0 1.0 CB h:LYS13 4.6 78.5 1.0 C h:CYS11 4.7 72.0 1.0 CA h:CYS27 4.7 75.0 1.0 CA h:LYS13 4.8 78.5 1.0 N h:LYS13 4.8 78.5 1.0 N h:ASN29 4.8 72.9 1.0 O h:LYS13 4.9 78.5 1.0 O h:ASN29 4.9 72.9 1.0 CA h:HIS32 4.9 72.0 1.0

M.R.Sharma, S.R.Manjari, E.K.Agrawal, P.Keshavan, R.K.Koripella, S.Majumdar, A.L.Marcinkiewicz, Y.P.Lin, R.K.Agrawal, N.K.Banavali. The Structure of A Hibernating Ribosome in A Lyme Disease Pathogen. Nat Commun V. 14 6961 2023.
ISSN: ESSN 2041-1723
PubMed: 37907464
DOI: 10.1038/S41467-023-42266-7