Zinc in PDB 8fgw: Human Ift-A Complex Structures Provide Molecular Insights Into Ciliary Transport

Zinc Binding Sites:

The binding sites of Zinc atom in the Human Ift-A Complex Structures Provide Molecular Insights Into Ciliary Transport (pdb code 8fgw). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 5 binding sites of Zinc where determined in the Human Ift-A Complex Structures Provide Molecular Insights Into Ciliary Transport, PDB code: 8fgw:
Jump to Zinc binding site number: 1; 2; 3; 4; 5;

Zinc binding site 1 out of 5 in 8fgw

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Zinc binding site 1 out of 5 in the Human Ift-A Complex Structures Provide Molecular Insights Into Ciliary Transport


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Human Ift-A Complex Structures Provide Molecular Insights Into Ciliary Transport within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1201

b:110.0
occ:1.00
SG A:CYS1155 2.3 82.8 1.0
SG A:CYS1173 2.3 71.0 1.0
SG A:CYS1158 2.3 83.3 1.0
SG A:CYS1176 2.3 65.9 1.0
CB A:CYS1158 2.8 83.3 1.0
CB A:CYS1155 2.9 82.8 1.0
CB A:CYS1173 3.0 71.0 1.0
N A:CYS1158 3.5 83.3 1.0
CA A:CYS1158 3.7 83.3 1.0
CB A:CYS1176 3.8 65.9 1.0
OG A:SER1178 4.1 71.8 1.0
N A:CYS1176 4.1 65.9 1.0
CA A:CYS1155 4.4 82.8 1.0
CA A:CYS1173 4.5 71.0 1.0
CA A:CYS1176 4.5 65.9 1.0
CB A:LEU1175 4.5 60.8 1.0
C A:CYS1158 4.5 83.3 1.0
C A:VAL1157 4.7 84.3 1.0
N A:LYS1159 4.8 81.0 1.0
C A:CYS1173 4.9 71.0 1.0
N A:VAL1157 4.9 84.3 1.0
O A:HIS1160 4.9 72.0 1.0
O A:CYS1173 5.0 71.0 1.0
N A:LEU1175 5.0 60.8 1.0

Zinc binding site 2 out of 5 in 8fgw

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Zinc binding site 2 out of 5 in the Human Ift-A Complex Structures Provide Molecular Insights Into Ciliary Transport


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Human Ift-A Complex Structures Provide Molecular Insights Into Ciliary Transport within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1301

b:61.3
occ:1.00
SG B:CYS1074 2.3 33.6 1.0
SG B:CYS1057 2.3 25.0 1.0
SG B:CYS1060 2.3 28.8 1.0
SG B:CYS1077 2.3 41.6 1.0
CB B:CYS1074 3.0 33.6 1.0
CB B:CYS1057 3.3 25.0 1.0
CB B:CYS1077 3.4 41.6 1.0
N B:CYS1077 3.7 41.6 1.0
O B:CYS1060 3.9 28.8 1.0
CB B:CYS1060 3.9 28.8 1.0
CA B:CYS1077 4.0 41.6 1.0
N B:CYS1060 4.0 28.8 1.0
C B:CYS1077 4.3 41.6 1.0
CA B:CYS1060 4.4 28.8 1.0
O B:CYS1077 4.5 41.6 1.0
CA B:CYS1074 4.5 33.6 1.0
C B:CYS1060 4.6 28.8 1.0
CA B:CYS1057 4.7 25.0 1.0
OG1 B:THR1062 4.8 29.6 1.0
N B:ILE1075 4.8 39.8 1.0
C B:ASN1076 4.8 53.4 1.0
CB B:ASN1076 4.8 53.4 1.0
N B:ASN1076 4.8 53.4 1.0
N B:ARG1078 4.9 37.5 1.0
N B:GLN1079 5.0 28.6 1.0
CB B:ARG1059 5.0 24.2 1.0
CB B:GLN1079 5.0 28.6 1.0

Zinc binding site 3 out of 5 in 8fgw

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Zinc binding site 3 out of 5 in the Human Ift-A Complex Structures Provide Molecular Insights Into Ciliary Transport


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Human Ift-A Complex Structures Provide Molecular Insights Into Ciliary Transport within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1302

b:32.2
occ:1.00
SG B:CYS1232 2.3 19.4 1.0
SG B:CYS1207 2.3 14.6 1.0
SG B:CYS1210 2.3 17.0 1.0
SG B:CYS1229 2.3 18.5 1.0
CB B:CYS1207 2.8 14.6 1.0
O B:SER1209 2.8 15.9 1.0
CB B:CYS1229 3.0 18.5 1.0
CB B:CYS1210 3.7 17.0 1.0
N B:CYS1232 3.7 19.4 1.0
CB B:CYS1232 3.7 19.4 1.0
O B:CYS1232 3.9 19.4 1.0
C B:SER1209 3.9 15.9 1.0
OG B:SER1209 4.0 15.9 1.0
CA B:CYS1232 4.2 19.4 1.0
CB B:TYR1231 4.3 17.1 1.0
CA B:CYS1207 4.3 14.6 1.0
C B:CYS1232 4.5 19.4 1.0
CA B:CYS1229 4.5 18.5 1.0
N B:CYS1210 4.6 17.0 1.0
CA B:CYS1210 4.6 17.0 1.0
C B:TYR1231 4.7 17.1 1.0
CG B:ARG1234 4.7 23.5 1.0
C B:CYS1207 4.8 14.6 1.0
CD B:ARG1234 4.9 23.5 1.0
CA B:TYR1231 4.9 17.1 1.0
N B:TYR1231 4.9 17.1 1.0
O B:CYS1207 4.9 14.6 1.0
CA B:SER1209 4.9 15.9 1.0

Zinc binding site 4 out of 5 in 8fgw

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Zinc binding site 4 out of 5 in the Human Ift-A Complex Structures Provide Molecular Insights Into Ciliary Transport


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Human Ift-A Complex Structures Provide Molecular Insights Into Ciliary Transport within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn1401

b:95.5
occ:1.00
SG C:CYS1317 2.3 43.9 1.0
SG C:CYS1314 2.3 45.9 1.0
SG C:CYS1292 2.3 55.1 1.0
SG C:CYS1295 2.3 49.5 1.0
CB C:CYS1292 3.0 55.1 1.0
CB C:CYS1314 3.0 45.9 1.0
CB C:CYS1317 3.4 43.9 1.0
CB C:CYS1295 3.6 49.5 1.0
N C:CYS1295 3.7 49.5 1.0
N C:CYS1317 3.9 43.9 1.0
CA C:CYS1317 4.2 43.9 1.0
CB C:HIS1294 4.3 44.9 1.0
CA C:CYS1295 4.3 49.5 1.0
CA C:CYS1292 4.5 55.1 1.0
CA C:CYS1314 4.5 45.9 1.0
CB C:MET1316 4.7 39.4 1.0
CD1 C:ILE1278 4.7 39.5 1.0
C C:HIS1294 4.8 44.9 1.0
N C:HIS1294 4.8 44.9 1.0
CA C:HIS1294 4.9 44.9 1.0
C C:MET1316 4.9 39.4 1.0
CD2 C:LEU1321 4.9 46.1 1.0
C C:CYS1292 5.0 55.1 1.0

Zinc binding site 5 out of 5 in 8fgw

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Zinc binding site 5 out of 5 in the Human Ift-A Complex Structures Provide Molecular Insights Into Ciliary Transport


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Human Ift-A Complex Structures Provide Molecular Insights Into Ciliary Transport within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn1402

b:80.5
occ:1.00
SG C:CYS1267 2.3 31.7 1.0
SG C:CYS1270 2.3 22.8 1.0
SG C:CYS1256 2.3 36.5 1.0
SG C:CYS1253 2.3 33.6 1.0
CB C:CYS1267 3.1 31.7 1.0
CB C:CYS1253 3.1 33.6 1.0
CB C:CYS1270 3.6 22.8 1.0
N C:CYS1270 3.7 22.8 1.0
CB C:CYS1256 3.8 36.5 1.0
N C:CYS1256 3.9 36.5 1.0
CA C:CYS1270 4.2 22.8 1.0
CB C:PHE1255 4.4 38.1 1.0
CA C:CYS1256 4.4 36.5 1.0
CB C:PHE1258 4.4 32.5 1.0
CA C:CYS1267 4.5 31.7 1.0
C C:GLY1269 4.6 23.6 1.0
CA C:CYS1253 4.6 33.6 1.0
CA C:GLY1269 4.7 23.6 1.0
N C:GLY1269 4.8 23.6 1.0
CD1 C:PHE1255 4.8 38.1 1.0
N C:PHE1255 4.9 38.1 1.0
C C:PHE1255 4.9 38.1 1.0
CA C:PHE1255 4.9 38.1 1.0
C C:CYS1267 4.9 31.7 1.0
C C:CYS1256 4.9 36.5 1.0
N C:PHE1258 5.0 32.5 1.0

Reference:

M.Jiang, V.R.Palicharla, D.Miller, S.H.Hwang, H.Zhu, P.Hixson, S.Mukhopadhyay, J.Sun. Human Ift-A Complex Structures Provide Molecular Insights Into Ciliary Transport. Cell Res. 2023.
ISSN: ISSN 1001-0602
PubMed: 36775821
DOI: 10.1038/S41422-023-00778-3
Page generated: Sat Apr 8 08:54:57 2023

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