Zinc in PDB 8dtd: Crystal Structure of Fosb From Bacillus Cereus with Zinc and Phosphonoformate

The structure of Crystal Structure of Fosb From Bacillus Cereus with Zinc and Phosphonoformate, PDB code: 8dtd was solved by S.Travis, N.C.Gilbert, M.K.Thompson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	51.07 / 1.95
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	56.474, 64.353, 83.942, 90, 90, 90
R / Rfree (%)	18.2 / 22.9

The binding sites of Zinc atom in the Crystal Structure of Fosb From Bacillus Cereus with Zinc and Phosphonoformate (pdb code 8dtd). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Fosb From Bacillus Cereus with Zinc and Phosphonoformate, PDB code: 8dtd:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Fosb From Bacillus Cereus with Zinc and Phosphonoformate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Fosb From Bacillus Cereus with Zinc and Phosphonoformate within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:29.8 occ:1.00 OE1 A:GLU115 2.0 23.0 1.0 NE2 B:HIS7 2.1 26.6 1.0 NE2 A:HIS66 2.1 27.6 1.0 O3 A:PPF301 2.2 37.6 1.0 O5 A:PPF301 2.2 36.0 1.0 CD A:GLU115 3.0 27.3 1.0 CE1 B:HIS7 3.0 27.2 1.0 C1 A:PPF301 3.1 40.3 1.0 CE1 A:HIS66 3.1 29.1 1.0 CD2 A:HIS66 3.1 25.9 1.0 CD2 B:HIS7 3.1 26.5 1.0 P1 A:PPF301 3.1 38.9 1.0 OE2 A:GLU115 3.4 27.1 1.0 O A:HOH421 3.9 31.1 1.0 O2 A:PPF301 4.0 37.7 1.0 OH A:TYR105 4.1 31.9 1.0 CE2 A:TYR105 4.1 29.7 1.0 ND1 A:HIS66 4.2 29.2 1.0 ND1 B:HIS7 4.2 25.7 1.0 CG A:HIS66 4.2 24.9 1.0 CG B:HIS7 4.2 26.2 1.0 O1 A:PPF301 4.2 35.4 1.0 O4 A:PPF301 4.3 44.3 1.0 CG A:GLU115 4.4 28.0 1.0 CB A:ALA68 4.4 30.4 1.0 CZ A:TYR105 4.6 30.7 1.0 CB A:GLU115 4.6 26.9 1.0 CB B:CYS9 4.6 35.5 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Fosb From Bacillus Cereus with Zinc and Phosphonoformate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Fosb From Bacillus Cereus with Zinc and Phosphonoformate within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn302 b:29.3 occ:1.00 OE1 B:GLU115 2.0 22.1 1.0 O2 B:PPF301 2.1 36.4 1.0 NE2 B:HIS66 2.1 26.0 1.0 NE2 A:HIS7 2.1 29.9 1.0 O4 B:PPF301 2.2 32.5 1.0 C1 B:PPF301 3.0 36.3 1.0 CD B:GLU115 3.0 26.8 1.0 P1 B:PPF301 3.0 36.5 1.0 CE1 B:HIS66 3.0 28.4 1.0 CE1 A:HIS7 3.0 28.1 1.0 CD2 B:HIS66 3.1 26.5 1.0 CD2 A:HIS7 3.2 28.5 1.0 OE2 B:GLU115 3.3 28.0 1.0 O B:HOH427 3.8 32.8 1.0 O3 B:PPF301 4.0 39.0 1.0 O1 B:PPF301 4.0 35.7 1.0 OH B:TYR105 4.1 32.0 1.0 CE2 B:TYR105 4.1 31.6 1.0 ND1 B:HIS66 4.2 25.9 1.0 ND1 A:HIS7 4.2 28.8 1.0 CG B:HIS66 4.2 24.6 1.0 O5 B:PPF301 4.3 39.8 1.0 CG A:HIS7 4.3 28.4 1.0 CG B:GLU115 4.3 25.7 1.0 CB B:ALA68 4.3 32.0 1.0 CZ B:TYR105 4.5 32.8 1.0 CB B:GLU115 4.6 25.1 1.0 CB A:CYS9 4.7 35.5 1.0

S.Travis, M.K.Thompson. Inhibition of Fosb By Ppf To Be Published.